# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	10.98		
3bduA	62	20.22		
1r0uA	148	20.85	b.60.1.5	96741
2uurA	245	22.96		
2bw2A	140	23.71		
1c8cA	64	25.89	b.34.13.1	59084
2erfA	209	27.84	b.29.1.4	132287
2eisA	133	28.37		
1jlyA	304	31.89	b.42.3.1,b.42.3.1	25587,25588
2ra2A	64	34.78		
2z1cA	75	36.77		
2v78A	313	37.17		
1r5lA	262	39.21	a.5.3.1,c.13.1.1	97099,97100
1bb8	71	40.10		
1p4uA	153	44.58	b.1.10.2	87780
1jsuC	84	46.23	j.55.1.1	46339
1yz7A	188	51.40		
1jmoA	480	53.32	e.1.1.1	77138
1dzkA	157	54.11	b.60.1.1	27096
2bvlA	543	54.92		
2ux0A	143	57.14		
3tssA	194	58.51	b.40.2.2,d.15.6.1	25160,37749
2q2bA	179	59.43		
1xrsB	262	61.86	c.23.6.1,d.230.4.1	115884,115885
2a1vA	144	62.20	d.198.3.1	126019
1wa5B	530	64.61	a.118.1.1	114432
2sak	121	65.43		
2sakA	121	65.43	d.15.5.1	37711
2fwtA	125	69.12		
1ucsA	64	72.31	b.85.1.1	88466
1rf6A	427	74.20	d.68.2.2	97366
1jmcA	246	74.47	b.40.4.3,b.40.4.3	25300,25301
1q2bA	434	75.46	b.29.1.10	95624
1rljA	139	77.43	c.23.5.7	104983
1te7A	103	78.82	b.122.1.7	112404
2aq6A	147	79.74	b.45.1.1	127156
1yreA	197	82.83	d.108.1.1	123919
2gfaA	119	82.97	b.34.9.1,b.34.9.1	135089,135090
1vpmA	169	83.71	d.38.1.1	113967
2pr5A	132	83.94		
1yliA	153	86.28	d.38.1.1	123651
1hg7A	66	86.33	b.85.1.1	28280
1uliA	460	87.00	b.33.1.2,d.129.3.3	107921,107922
2gysA	419	89.57	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
2ak3A	226	89.70	c.37.1.1,g.41.2.1	31892,45193