# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3ba3A 145 1.143 2e5yA 133 1.231 2oqkA 117 1.562 2e2dC 180 2.630 b.40.3.1 131980 1wocA 103 2.635 1d7qA 143 2.682 b.40.4.5 25331 1c8cA 64 3.989 b.34.13.1 59084 1v9fA 325 4.014 d.265.1.3 108448 2a19A 175 4.286 2bw2A 140 5.200 1vkkA 154 6.118 d.109.1.2 108669 2z1cA 75 6.273 1xyiA 66 6.554 1l1oC 181 6.783 b.40.4.3 73480 2j2zA 218 6.826 b.1.11.1,b.7.2.1 137974,137975 1fs0E 138 7.337 a.2.10.1,b.93.1.1 59997,59998 1at0A 145 8.397 b.86.1.1 28374 1vcdA 126 8.858 d.113.1.1 119970 1at0 145 9.107 1hztA 190 10.36 d.113.1.2 61459 1xweA 151 11.32 b.40.3.3 116125 1ykjA 394 14.54 1br9 194 14.97 2ra2A 64 15.00 1y1oA 203 15.39 c.52.1.28 116345 1q46A 175 16.56 a.60.14.1,b.40.4.5 111594,111595 1jmcA 246 17.20 b.40.4.3,b.40.4.3 25300,25301 1lcyA 325 17.92 b.36.1.4,b.47.1.1 73834,73835 1pfo 500 18.18 3c8cA 240 18.88 1ub4A 110 19.65 b.34.6.2 88399 2pi2A 270 19.98 2dj6A 115 20.52 1pfoA 500 23.43 f.9.1.1 43826 2p0pA 126 24.96 1fl0A 171 26.98 b.40.4.4 25315 2fjtA 182 27.55 1n0lA 224 30.71 b.1.11.1,b.7.2.1 79744,79745 2acaA 189 33.82 d.63.1.2 126545 2z5eA 122 38.98 1iyjB 817 39.24 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1u69A 163 39.92 d.32.1.7 107699 1yqyA 523 41.89 d.92.1.14,d.166.1.1 123903,123904 1s55A 156 42.46 b.22.1.1 118865 2gfaA 119 43.03 b.34.9.1,b.34.9.1 135089,135090 2pfrA 294 44.53 1o7iA 119 44.91 b.40.4.3 86642 2i5hA 205 45.46 1yfnA 118 45.68 b.136.1.1 123080 2qlcA 126 47.00 2oyoA 196 47.48 3bduA 62 47.88 2v40A 459 50.30 1hskA 326 50.51 d.145.1.2,d.146.1.1 61241,61242 1mi8A 158 50.95 b.86.1.2 91279 2vouA 397 51.91 1mspA 126 52.91 b.1.11.2 22333 2c5qA 240 53.26 1qf5A 431 54.12 c.37.1.10 32212 1ou8A 111 56.71 b.136.1.1 93543 3bk2A 562 57.61 1j3wA 163 57.77 d.110.7.1 90833 2czrA 226 57.93 2axtB 510 59.86 2cwpA 112 60.13 1iweA 457 61.20 c.37.1.10 71486 2co7B 221 61.27 1c1lA 136 61.53 b.29.1.3 24219 1vgyA 393 62.23 c.56.5.4,d.58.19.1 100620,100621 2jn0A 61 63.16 2rb7A 364 65.34 1quqA 129 66.06 b.40.4.3 25303 1w4sA 174 66.99 2rhsB 800 67.09 2ddhA 661 67.49 a.29.3.2,a.29.3.2,e.6.1.2 131394,131395,131396 1whzA 70 68.14 d.50.3.2 114656 1se8A 301 68.96 b.40.4.3 105448 1hqz1 141 69.24 3tmkA 216 69.40 c.37.1.1 31920 4ubpB 126 70.41 b.85.3.1 28345 2q7eA 291 70.89 2i4iA 417 71.62 3bnwA 181 71.76 1zn6A 227 74.24 d.303.1.1 125373 3bp1A 290 74.39 2pavP 139 75.44 1ktgA 138 75.76 d.113.1.1 72972 1f60B 94 77.01 d.58.12.1 39307 2jxtA 86 77.05 1h8eH 146 77.66 b.93.1.1 60757 2r98A 456 78.52 1rg9A 383 80.09 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1wdiA 345 80.66 e.53.1.1 114535 1y96A 86 81.35 1u5kA 244 81.44 b.40.4.13,g.45.1.2 113038,113039 1x65A 89 84.16 1clcA 639 84.37 a.102.1.2,b.1.18.2 18835,21872 3c2qA 345 86.33 2oauA 306 87.09 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1ijtA 128 88.00 b.42.1.1 62510 1nkiA 135 88.14 d.32.1.2 91941 1earA 147 88.63 b.107.1.1,d.58.38.1 64875,64876 2ebeA 106 88.87 2qdlA 165 89.47