# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1aw7A 194 6.850 b.40.2.2,d.15.6.1 25164,37753 1azpA 66 8.014 b.34.13.1 37467 1te7A 103 10.26 b.122.1.7 112404 1xyiA 66 10.67 1cdcA 99 10.72 b.1.1.1 19746 3tssA 194 13.19 b.40.2.2,d.15.6.1 25160,37749 1c8cA 64 16.17 b.34.13.1 59084 2sakA 121 16.22 d.15.5.1 37711 3bwlA 126 17.35 2e9yA 316 18.37 3bduA 62 18.70 1bb8 71 22.01 1d7qA 143 23.91 b.40.4.5 25331 2h41A 95 23.94 1td4A 115 24.04 b.85.2.1 112389 1ayfA 105 24.26 d.15.4.1 37684 2erfA 209 24.93 b.29.1.4 132287 1qw9A 502 25.03 b.71.1.2,c.1.8.3 96466,96467 1iwlA 182 25.42 b.125.1.1 83757 2eisA 133 25.83 1kt6A 183 26.48 b.60.1.1 84466 1vpmA 169 27.09 d.38.1.1 113967 2yqcA 486 27.43 2j1vA 151 27.63 3cp3A 148 27.87 2ra2A 64 29.66 2uurA 245 30.10 2r78A 117 30.62 2dq6A 870 31.69 2a1vA 144 33.19 d.198.3.1 126019 2q2bA 179 34.16 2bw2A 140 34.22 1wcqA 601 36.29 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 1hbq 183 36.50 2ux0A 143 36.62 1yliA 153 37.31 d.38.1.1 123651 2pz4A 239 38.83 2oqkA 117 39.51 1h6hA 143 39.52 d.189.1.1 65681 2qe7H 135 39.73 1q38A 89 40.21 b.1.2.1 95663 2ic2A 115 41.24 b.1.2.1 137233 1a8dA 452 42.39 b.29.1.6,b.42.4.2 24262,25607 3byvA 377 44.72 3bjoA 103 45.51 1v3yA 192 46.21 d.167.1.1 113508 2z1cA 75 46.60 1dq3A 454 47.09 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 3buuA 229 48.18 1phkA 298 48.19 d.144.1.7 41635 1nqjA 119 48.87 b.23.2.1 86031 1lmeA 176 49.14 d.167.1.1 84629 2j82A 240 49.31 1bs4A 168 49.99 d.167.1.1 42287 2os5A 119 50.60 2e5yA 133 51.54 1senA 164 53.88 c.47.1.1 105465 2jfrA 234 54.35 1bb8A 71 54.45 d.10.1.1 37478 2p3yA 491 55.53 1hfoA 113 55.90 d.80.1.3 61006 2por 301 56.23 1y6hA 177 56.25 d.167.1.1 116505 1lm4A 194 56.51 d.167.1.1 84626 3bjkA 153 58.00 1n5nA 180 58.17 d.167.1.1 85336 1ju2A 536 59.35 c.3.1.2,d.16.1.1 77169,77170 2qmjA 870 60.59 1vl7A 157 60.99 b.45.1.1 108732 1qgxA 357 61.94 e.7.1.1 42973 1cfb 205 61.95 2gkpA 167 61.96 1a64A 97 62.01 b.1.1.1 19750 1m3iA 471 62.14 f.9.1.1 91178 1wocA 103 62.66 1jsuC 84 65.52 j.55.1.1 46339 1jpkA 388 66.29 c.1.22.1 67026 1ucsA 64 68.18 b.85.1.1 88466 1iu1A 146 68.64 b.1.10.2 71428 1kqqA 139 70.80 a.4.3.1 72885 2in5A 207 70.98 1wmhA 89 71.17 d.15.2.2 114744 1hg7A 66 71.20 b.85.1.1 28280 1tl2A 236 72.51 b.67.1.1 27541 2pqcA 445 73.62 1lm6A 215 74.00 d.167.1.1 84628 2d5lA 706 75.09 2c0dA 221 75.94 2v1oA 151 76.26 1sxvA 172 76.79 1bmdA 327 77.27 c.2.1.5,d.162.1.1 30139,42106 1tupA 219 78.90 b.2.5.2 22434 1pfo 500 79.63 2rikA 284 81.38 1rf6A 427 81.62 d.68.2.2 97366 2f01A 127 83.21 b.61.1.1 132647 1pfoA 500 84.43 f.9.1.1 43826 2aukA 190 85.06 2glwA 92 86.68 1n8fA 350 89.17 c.1.10.4 85397 1wi5A 119 89.85 b.40.4.5 114661 1i7qB 193 89.93 c.23.16.1 61902