# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bb8	71	8.768		
1azpA	66	9.96	b.34.13.1	37467
1cdcA	99	14.59	b.1.1.1	19746
1c8cA	64	15.15	b.34.13.1	59084
1qw9A	502	17.73	b.71.1.2,c.1.8.3	96466,96467
3bwlA	126	19.04		
1xyiA	66	20.64		
1cfb	205	22.89		
1i7qB	193	23.51	c.23.16.1	61902
2j1vA	151	26.18		
3cp3A	148	26.93		
1tupA	219	28.36	b.2.5.2	22434
1a8dA	452	29.72	b.29.1.6,b.42.4.2	24262,25607
2uurA	245	30.71		
2erfA	209	31.26	b.29.1.4	132287
2d5lA	706	34.81		
2glwA	92	35.68		
1te7A	103	38.78	b.122.1.7	112404
2e9yA	316	38.88		
3tssA	194	39.47	b.40.2.2,d.15.6.1	25160,37749
1iu1A	146	40.39	b.1.10.2	71428
2z1cA	75	41.43		
1aw7A	194	45.67	b.40.2.2,d.15.6.1	25164,37753
3byvA	377	45.96		
2ux0A	143	50.43		
2r78A	117	50.82		
1bb8A	71	51.22	d.10.1.1	37478
2q7eA	291	51.34		
1td4A	115	52.48	b.85.2.1	112389
2bc3A	159	54.77	b.61.1.1	128279
2sakA	121	56.27	d.15.5.1	37711
1rf6A	427	56.48	d.68.2.2	97366
3bduA	62	58.14		
2p3yA	491	60.80		
2a1vA	144	63.15	d.198.3.1	126019
2yqcA	486	65.33		
1qgxA	357	65.63	e.7.1.1	42973
1a64A	97	65.81	b.1.1.1	19750
1phkA	298	66.71	d.144.1.7	41635
1iwlA	182	69.42	b.125.1.1	83757
1ju2A	536	71.39	c.3.1.2,d.16.1.1	77169,77170
1d7qA	143	71.60	b.40.4.5	25331
1tl2A	236	71.85	b.67.1.1	27541
2pqcA	445	72.22		
2jfrA	234	72.65		
2por	301	72.68		
1d2sA	170	73.43	b.29.1.4	24221
2e5yA	133	73.62		
2rb6A	61	74.09		
1xj4A	119	78.57	d.110.3.2	122027
1hg7A	66	82.58	b.85.1.1	28280
2h41A	95	82.70		
4tsvA	150	83.80	b.22.1.1	23860
1gyvA	120	84.36	b.1.10.2	70790
1ucsA	64	85.92	b.85.1.1	88466
1ayfA	105	86.75	d.15.4.1	37684
2q2bA	179	86.76		
1q15A	503	86.89	c.26.2.1,d.153.1.1	95538,95539
2inbA	140	87.01		
1fepA	724	87.29	f.4.3.3	43808
2eisA	133	88.09		
3cokA	278	88.54