# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bb8	71	5.330		
1i7qB	193	11.08	c.23.16.1	61902
1cfb	205	11.81		
1cdcA	99	21.11	b.1.1.1	19746
1qgxA	357	24.88	e.7.1.1	42973
1azpA	66	25.43	b.34.13.1	37467
1bb8A	71	30.37	d.10.1.1	37478
2a1vA	144	31.39	d.198.3.1	126019
2j1vA	151	32.61		
1tupA	219	33.08	b.2.5.2	22434
1te7A	103	36.49	b.122.1.7	112404
1rf6A	427	37.73	d.68.2.2	97366
1qw9A	502	37.74	b.71.1.2,c.1.8.3	96466,96467
1td4A	115	38.19	b.85.2.1	112389
3bwlA	126	39.89		
2pqcA	445	41.33		
2z1cA	75	42.51		
1iu1A	146	44.10	b.1.10.2	71428
1xyiA	66	47.58		
1c8cA	64	47.78	b.34.13.1	59084
3cp3A	148	48.90		
2nvmA	126	49.24	d.326.1.1	138631
2d5lA	706	50.49		
2e9yA	316	50.61		
2jfrA	234	51.01		
4tsvA	150	52.25	b.22.1.1	23860
1lvmA	229	52.32	b.47.1.3	78243
2q7eA	291	54.53		
2sakA	121	55.05	d.15.5.1	37711
1aw7A	194	56.71	b.40.2.2,d.15.6.1	25164,37753
2j82A	240	57.65		
3byvA	377	59.47		
1a8dA	452	60.23	b.29.1.6,b.42.4.2	24262,25607
2cxyA	125	62.20		
1hg7A	66	64.46	b.85.1.1	28280
2gg6A	455	67.21		
1fepA	724	67.99	f.4.3.3	43808
2v1oA	151	69.81		
1ucsA	64	71.27	b.85.1.1	88466
2qxlA	658	71.49		
1q15A	503	72.14	c.26.2.1,d.153.1.1	95538,95539
1gyvA	120	73.11	b.1.10.2	70790
1kqqA	139	74.24	a.4.3.1	72885
1uhgA	385	76.34	e.1.1.1	88491
2fwtA	125	76.50		
2p3yA	491	77.80		
2erfA	209	79.74	b.29.1.4	132287
3tssA	194	80.57	b.40.2.2,d.15.6.1	25160,37749
2r78A	117	81.54		
1g6sA	427	83.99	d.68.2.2	39584
1jrrA	382	86.58	e.1.1.1	63256
1iwlA	182	86.67	b.125.1.1	83757
2uurA	245	88.44		
1ayfA	105	88.55	d.15.4.1	37684
2bc3A	159	89.72	b.61.1.1	128279