# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bb8	71	4.723		
1cfb	205	14.32		
1azpA	66	16.34	b.34.13.1	37467
1cdcA	99	16.72	b.1.1.1	19746
1i7qB	193	17.29	c.23.16.1	61902
1te7A	103	26.24	b.122.1.7	112404
1bb8A	71	27.97	d.10.1.1	37478
1tupA	219	28.37	b.2.5.2	22434
1c8cA	64	29.90	b.34.13.1	59084
2j1vA	151	31.15		
1xyiA	66	35.34		
1iu1A	146	36.16	b.1.10.2	71428
1qw9A	502	36.50	b.71.1.2,c.1.8.3	96466,96467
1rf6A	427	37.88	d.68.2.2	97366
2pqcA	445	38.12		
3cp3A	148	43.19		
2z1cA	75	44.12		
2q7eA	291	46.52		
1qgxA	357	48.97	e.7.1.1	42973
1aw7A	194	49.53	b.40.2.2,d.15.6.1	25164,37753
1td4A	115	50.29	b.85.2.1	112389
3bwlA	126	50.39		
4tsvA	150	53.78	b.22.1.1	23860
2d5lA	706	54.87		
1lvmA	229	56.73	b.47.1.3	78243
1gyvA	120	56.86	b.1.10.2	70790
2j82A	240	57.48		
2nvmA	126	57.80	d.326.1.1	138631
2jfrA	234	58.71		
2sakA	121	59.38	d.15.5.1	37711
1hg7A	66	60.73	b.85.1.1	28280
1s28A	132	61.94	d.198.1.1	105223
1fepA	724	62.00	f.4.3.3	43808
1ucsA	64	62.33	b.85.1.1	88466
3byvA	377	63.23		
1egnA	434	63.62	b.29.1.10	59411
1a8dA	452	63.71	b.29.1.6,b.42.4.2	24262,25607
2v1oA	151	64.70		
2e9yA	316	64.72		
2erfA	209	66.51	b.29.1.4	132287
2a1vA	144	67.07	d.198.3.1	126019
2gg6A	455	68.92		
2r78A	117	74.56		
3tssA	194	74.87	b.40.2.2,d.15.6.1	25160,37749
1jpkA	388	77.45	c.1.22.1	67026
1iwlA	182	77.82	b.125.1.1	83757
1uhgA	385	79.05	e.1.1.1	88491
2uurA	245	80.05		
1jrrA	382	81.03	e.1.1.1	63256
2yqcA	486	81.72		
1umzA	278	82.30	b.29.1.2	99639
1q2bA	434	82.50	b.29.1.10	95624
2inbA	140	83.55		
2p3yA	491	84.83		
1kqqA	139	87.35	a.4.3.1	72885
2jdiH	146	89.12	a.2.10.1,b.93.1.1	138273,138274