# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xyiA	66	9.184		
1azpA	66	9.905	b.34.13.1	37467
1cfb	205	16.31		
2j1vA	151	20.88		
1eu8A	409	35.13	c.94.1.1	59502
3buuA	229	36.93		
1cdcA	99	37.01	b.1.1.1	19746
1sg7A	96	37.59	a.239.1.1	118961
3ca8A	266	38.24		
2bw2A	140	44.83		
2a1vA	144	47.88	d.198.3.1	126019
1x7yA	400	48.38	c.36.1.11	114944
2v1oA	151	49.91		
1c8cA	64	58.26	b.34.13.1	59084
2z1cA	75	61.39		
1vkwA	218	61.62	d.90.1.2	108695
2yqcA	486	64.21		
2z8fA	412	64.76		
1wh8A	111	64.91	a.35.1.7	114636
2dreA	180	66.07		
1ihkA	174	66.31	b.42.1.1	62384
1td4A	115	78.84	b.85.2.1	112389
2cm1A	260	79.28		
2oqkA	117	79.75		
1vpmA	169	80.16	d.38.1.1	113967
1wi5A	119	80.16	b.40.4.5	114661
1rc6A	261	80.41	b.82.1.11	97287
1jpkA	388	80.89	c.1.22.1	67026
3bjkA	153	83.61		
2r15A	212	85.45		
1yliA	153	86.31	d.38.1.1	123651
2aukA	190	88.55		
1d7qA	143	89.92	b.40.4.5	25331