# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bb8	71	6.510		
1azpA	66	7.787	b.34.13.1	37467
2e9yA	316	11.89		
1cdcA	99	14.23	b.1.1.1	19746
1iu1A	146	15.00	b.1.10.2	71428
2j1vA	151	16.56		
1xyiA	66	16.82		
1c8cA	64	19.48	b.34.13.1	59084
1aw7A	194	19.93	b.40.2.2,d.15.6.1	25164,37753
2d5lA	706	20.11		
3tssA	194	20.44	b.40.2.2,d.15.6.1	25160,37749
2uurA	245	24.25		
1cfb	205	26.66		
1gyvA	120	26.97	b.1.10.2	70790
1phkA	298	27.86	d.144.1.7	41635
3byvA	377	29.12		
1qw9A	502	29.19	b.71.1.2,c.1.8.3	96466,96467
2sakA	121	30.37	d.15.5.1	37711
3bduA	62	30.66		
2bc3A	159	30.66	b.61.1.1	128279
2h41A	95	31.16		
1tupA	219	32.98	b.2.5.2	22434
2erfA	209	33.92	b.29.1.4	132287
2r78A	117	36.29		
1bb8A	71	36.47	d.10.1.1	37478
1tl2A	236	39.98	b.67.1.1	27541
3bwlA	126	40.24		
1i7qB	193	40.28	c.23.16.1	61902
2q7eA	291	41.57		
1te7A	103	43.13	b.122.1.7	112404
2jfrA	234	47.72		
1a8dA	452	50.72	b.29.1.6,b.42.4.2	24262,25607
2ux0A	143	51.28		
1qgxA	357	51.69	e.7.1.1	42973
1td4A	115	52.13	b.85.2.1	112389
2ra2A	64	52.30		
1ju2A	536	52.57	c.3.1.2,d.16.1.1	77169,77170
1q15A	503	53.38	c.26.2.1,d.153.1.1	95538,95539
1egnA	434	53.73	b.29.1.10	59411
1ucsA	64	56.23	b.85.1.1	88466
3cp3A	148	56.66		
2z1cA	75	58.45		
3buuA	229	65.73		
1iwlA	182	66.06	b.125.1.1	83757
1hg7A	66	66.22	b.85.1.1	28280
3cokA	278	66.90		
1ayfA	105	67.32	d.15.4.1	37684
2a7bA	120	70.04	b.1.10.2	126333
1a64A	97	70.92	b.1.1.1	19750
2avwA	311	73.89		
1q2bA	434	74.85	b.29.1.10	95624
2a19B	284	75.72		
1rdqE	350	76.26	d.144.1.7	97314
2inbA	140	77.49		
2j22A	148	77.99		
1rf6A	427	82.63	d.68.2.2	97366
2yqcA	486	83.50		
1hbq	183	85.88		
1v3yA	192	88.15	d.167.1.1	113508