# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1bb8 71 2.753 1rc6A 261 5.306 b.82.1.11 97287 2biqA 219 5.473 1xyiA 66 7.341 1qgxA 357 7.437 e.7.1.1 42973 2q7eA 291 7.596 2j1vA 151 8.930 2p3yA 491 10.81 1c4kA 730 11.75 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 2dq6A 870 11.78 2epgA 487 12.00 1prtA 234 13.48 d.166.1.1 42253 1cdcA 99 13.61 b.1.1.1 19746 1bb8A 71 13.63 d.10.1.1 37478 1tl2A 236 14.58 b.67.1.1 27541 1i7qB 193 14.64 c.23.16.1 61902 1tupA 219 15.63 b.2.5.2 22434 1m3iA 471 16.39 f.9.1.1 91178 1wkbA 810 19.22 1azpA 66 19.34 b.34.13.1 37467 1hc7A 477 20.19 c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1olzA 663 20.25 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 3buuA 229 21.38 1iu1A 146 21.42 b.1.10.2 71428 2bc3A 159 23.65 b.61.1.1 128279 2p39A 155 23.91 3byvA 377 26.08 1feuA 206 26.70 b.53.1.1 59801 1zybA 232 27.22 a.4.5.4,b.82.3.2 125815,125816 2erfA 209 27.27 b.29.1.4 132287 1td4A 115 27.71 b.85.2.1 112389 2bnuA 203 28.25 2hq6A 185 28.27 1mrgA 263 29.13 d.165.1.1 42183 2cxvA 219 31.22 b.47.1.4 131012 2iw2A 494 31.99 2a6vA 226 32.62 b.29.1.13 126312 2pz4A 239 34.02 2h41A 95 34.71 2uurA 245 34.92 1lj8A 493 35.02 a.100.1.9,c.2.1.6 90392,90393 1npeA 267 37.42 b.68.5.1 92032 1o1zA 234 37.80 c.1.18.3 86555 1x8qA 184 38.07 b.60.1.1 114966 1yqfA 203 38.88 d.25.1.1 123880 1evlA 401 40.40 c.51.1.1,d.104.1.1 33202,40751 1v33A 366 41.19 d.264.1.1 100278 1ecfA 504 41.40 c.61.1.1,d.153.1.1 34053,41820 3cp3A 148 42.12 1pjxA 314 42.18 b.68.6.1 104167 1lci 550 42.60 1rf6A 427 43.30 d.68.2.2 97366 1ayfA 105 43.45 d.15.4.1 37684 1rocA 155 44.58 b.1.22.1 97673 2jfrA 234 44.69 2okxA 956 45.45 2qmqA 286 45.66 2z1cA 75 45.96 2b6nA 278 46.06 1v3yA 192 46.85 d.167.1.1 113508 2vpjA 301 47.07 1gg3A 279 48.12 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 2airB 153 48.87 d.58.2.1,g.41.7.1 126832,126833 3tssA 194 49.27 b.40.2.2,d.15.6.1 25160,37749 2pyxA 526 49.28 2qmjA 870 50.58 2jdiH 146 54.47 a.2.10.1,b.93.1.1 138273,138274 2hw2A 143 54.95 2raaA 204 55.17 2rftA 344 55.31 1hk8A 605 55.85 c.7.1.3 83540 1ct9A 553 56.00 c.26.2.1,d.153.1.1 31616,41834 1z0wA 207 59.69 2e9yA 316 60.77 1i78A 297 60.88 f.4.4.1 66046 4tsvA 150 61.56 b.22.1.1 23860 2q2bA 179 61.64 1f52A 468 61.69 d.15.9.1,d.128.1.1 37839,41169 1xwvA 129 62.07 b.1.18.7 116134 1yliA 153 62.13 d.38.1.1 123651 2vovA 336 62.14 1g71A 347 63.91 d.264.1.1 43268 1nqjA 119 65.52 b.23.2.1 86031 2fhdA 153 65.79 3bpkA 206 65.85 1qh5A 260 65.95 d.157.1.2 42057 2glwA 92 67.68 2gfaA 119 67.78 b.34.9.1,b.34.9.1 135089,135090 2ra2A 64 69.31 2yrvA 117 70.69 1jpkA 388 71.03 c.1.22.1 67026 2eeyA 162 71.27 3bs6A 280 71.31 2pi2E 142 71.71 3bwxA 285 73.45 1wz9A 375 76.16 1vpmA 169 76.87 d.38.1.1 113967 1c8cA 64 77.08 b.34.13.1 59084 1lmeA 176 77.38 d.167.1.1 84629 2r78A 117 77.83 1a64A 97 77.95 b.1.1.1 19750 2nvmA 126 77.96 d.326.1.1 138631 2a7bA 120 78.78 b.1.10.2 126333 3bduA 62 80.85 1te7A 103 81.03 b.122.1.7 112404 1aw7A 194 81.08 b.40.2.2,d.15.6.1 25164,37753 2z8gA 549 81.44 1sekA 378 81.61 e.1.1.1 42675 1ojrA 274 82.17 c.74.1.1 93147 3c2uA 538 84.07 2b5nA 323 84.79 1q3iA 214 85.27 d.220.1.1 104524 1a8dA 452 85.73 b.29.1.6,b.42.4.2 24262,25607 1phkA 298 87.63 d.144.1.7 41635 1alvA 173 88.08 a.39.1.8 17370 2e6mA 208 88.49 1klfB 279 89.69 b.2.3.2,b.2.3.2 72684,72685 1y6hA 177 89.92 d.167.1.1 116505