# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bb8	71	4.207		
1cfb	205	11.51		
1i7qB	193	14.64	c.23.16.1	61902
1cdcA	99	17.33	b.1.1.1	19746
1azpA	66	17.87	b.34.13.1	37467
2j1vA	151	17.89		
1bb8A	71	21.59	d.10.1.1	37478
1xyiA	66	24.85		
1qw9A	502	30.62	b.71.1.2,c.1.8.3	96466,96467
1iu1A	146	31.87	b.1.10.2	71428
2jfrA	234	35.46		
1jrrA	382	37.70	e.1.1.1	63256
2q7eA	291	40.16		
1tupA	219	40.64	b.2.5.2	22434
2d5lA	706	41.76		
2bc3A	159	42.74	b.61.1.1	128279
1td4A	115	43.99	b.85.2.1	112389
2e9yA	316	44.65		
2h41A	95	46.01		
1gyvA	120	47.66	b.1.10.2	70790
3tssA	194	47.94	b.40.2.2,d.15.6.1	25160,37749
1te7A	103	48.91	b.122.1.7	112404
1fepA	724	49.06	f.4.3.3	43808
1tl2A	236	50.03	b.67.1.1	27541
2sakA	121	51.72	d.15.5.1	37711
1phkA	298	51.75	d.144.1.7	41635
1qgxA	357	51.89	e.7.1.1	42973
3byvA	377	53.59		
1q15A	503	55.67	c.26.2.1,d.153.1.1	95538,95539
1rf6A	427	55.86	d.68.2.2	97366
3cp3A	148	57.24		
1rdqE	350	57.25	d.144.1.7	97314
2jdiH	146	57.80	a.2.10.1,b.93.1.1	138273,138274
1prtA	234	58.47	d.166.1.1	42253
3bduA	62	59.92		
2erfA	209	61.89	b.29.1.4	132287
1egnA	434	61.89	b.29.1.10	59411
1c8cA	64	62.06	b.34.13.1	59084
1ucsA	64	64.73	b.85.1.1	88466
2z1cA	75	65.30		
2a1vA	144	66.39	d.198.3.1	126019
1uhgA	385	72.55	e.1.1.1	88491
4tsvA	150	73.17	b.22.1.1	23860
2pqcA	445	75.40		
2fwtA	125	78.10		
1hg7A	66	79.41	b.85.1.1	28280
2inbA	140	80.34		
2yqcA	486	86.57		
2uurA	245	87.37		
2nvmA	126	88.74	d.326.1.1	138631
1jpkA	388	88.78	c.1.22.1	67026