# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1cfb	205	3.760		
1bb8	71	5.278		
1i7qB	193	11.41	c.23.16.1	61902
2q7eA	291	21.11		
1te7A	103	24.24	b.122.1.7	112404
2e9yA	316	24.44		
2j1vA	151	25.82		
2a1vA	144	27.19	d.198.3.1	126019
1bb8A	71	28.79	d.10.1.1	37478
1tupA	219	30.46	b.2.5.2	22434
1qgxA	357	33.04	e.7.1.1	42973
1azpA	66	35.88	b.34.13.1	37467
1cdcA	99	39.23	b.1.1.1	19746
1qw9A	502	39.75	b.71.1.2,c.1.8.3	96466,96467
1c8cA	64	40.06	b.34.13.1	59084
1egnA	434	41.51	b.29.1.10	59411
1xyiA	66	43.48		
3cp3A	148	45.48		
1td4A	115	49.90	b.85.2.1	112389
1aw7A	194	51.82	b.40.2.2,d.15.6.1	25164,37753
1iu1A	146	52.54	b.1.10.2	71428
1rf6A	427	57.57	d.68.2.2	97366
1s28A	132	59.44	d.198.1.1	105223
2inbA	140	59.92		
2yqcA	486	61.94		
1q2bA	434	64.11	b.29.1.10	95624
2sakA	121	64.44	d.15.5.1	37711
2jdiH	146	64.49	a.2.10.1,b.93.1.1	138273,138274
2pqcA	445	68.68		
1gyvA	120	70.12	b.1.10.2	70790
2z1cA	75	70.97		
1fepA	724	72.24	f.4.3.3	43808
1jpkA	388	73.64	c.1.22.1	67026
1q15A	503	80.26	c.26.2.1,d.153.1.1	95538,95539
2v1oA	151	82.67		
2d5lA	706	83.18		
2erfA	209	85.79	b.29.1.4	132287