# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1bb8	71	6.055		
1cfb	205	8.523		
1azpA	66	15.71	b.34.13.1	37467
1aw7A	194	18.40	b.40.2.2,d.15.6.1	25164,37753
1te7A	103	21.62	b.122.1.7	112404
2j1vA	151	21.66		
2e9yA	316	22.20		
1cdcA	99	22.80	b.1.1.1	19746
1qgxA	357	23.23	e.7.1.1	42973
1xyiA	66	23.37		
1i7qB	193	25.74	c.23.16.1	61902
1phkA	298	31.70	d.144.1.7	41635
1bb8A	71	32.80	d.10.1.1	37478
1c8cA	64	36.51	b.34.13.1	59084
1td4A	115	39.09	b.85.2.1	112389
2erfA	209	41.32	b.29.1.4	132287
2z1cA	75	44.21		
2sakA	121	46.23	d.15.5.1	37711
3tssA	194	49.47	b.40.2.2,d.15.6.1	25160,37749
1iu1A	146	49.79	b.1.10.2	71428
2jfrA	234	52.51		
2h41A	95	54.87		
2rijA	387	54.93		
2a1vA	144	56.43	d.198.3.1	126019
1ktjA	129	57.64	b.1.18.7	72974
2inbA	140	58.42		
1ayfA	105	58.79	d.15.4.1	37684
3bwlA	126	58.80		
1nqjA	119	63.20	b.23.2.1	86031
1ka1A	357	63.21	e.7.1.1	68369
2r78A	117	66.06		
2jdiH	146	66.42	a.2.10.1,b.93.1.1	138273,138274
2bc3A	159	68.70	b.61.1.1	128279
2q7eA	291	70.19		
2bw2A	140	73.03		
1egnA	434	73.22	b.29.1.10	59411
3buuA	229	74.21		
2yqcA	486	76.00		
3byvA	377	82.50		
1j7xA	302	82.78	c.14.1.2	66425
1sg7A	96	85.41	a.239.1.1	118961
1prtA	234	87.34	d.166.1.1	42253
1v3yA	192	87.96	d.167.1.1	113508
1tupA	219	88.84	b.2.5.2	22434
4tsvA	150	89.43	b.22.1.1	23860
2j82A	240	89.93