# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3buuA	229	0.6353		
1bb8	71	11.48		
1eu8A	409	18.25	c.94.1.1	59502
1nls	237	18.60		
1td4A	115	19.54	b.85.2.1	112389
2q2bA	179	20.23		
2dreA	180	21.38		
1xyiA	66	22.58		
1wi5A	119	22.66	b.40.4.5	114661
1azpA	66	26.43	b.34.13.1	37467
2dlxA	153	27.26		
2fwtA	125	31.34		
2j1vA	151	32.77		
2b8wA	328	37.20		
2v1oA	151	37.43		
1x7yA	400	38.11	c.36.1.11	114944
2a13A	166	38.40	b.60.1.8	125971
1cfb	205	38.43		
2jdiH	146	41.87	a.2.10.1,b.93.1.1	138273,138274
2bw2A	140	42.64		
2cxyA	125	53.91		
1q40B	219	54.46	d.17.4.2	95771
2uurA	245	55.57		
2b1kA	168	56.61		
1avwB	171	57.88	b.42.4.1	25599
1vpmA	169	58.62	d.38.1.1	113967
2qv8A	159	61.27		
1wgrA	100	62.36	d.15.1.5	114621
2erfA	209	64.01	b.29.1.4	132287
1ifrA	121	64.51	b.1.16.1	71203
1rocA	155	68.82	b.1.22.1	97673
2qrwA	128	69.99		
1t0tV	248	70.15	d.58.4.10	106229
2sakA	121	71.31	d.15.5.1	37711
3ckdA	312	73.44		
2qfdA	145	74.77		
2z8fA	412	75.64		
2uu8A	237	77.47		
2oqkA	117	77.64		
2z1cA	75	79.70		
2a1vA	144	80.75	d.198.3.1	126019
1iqaA	160	81.13	b.22.1.1	71274
1q38A	89	81.54	b.1.2.1	95663
4tsvA	150	82.49	b.22.1.1	23860
2bvlA	543	85.53		
2jmhA	119	86.35		
2glwA	92	87.66		
2e5pA	68	88.15