# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1wocA 103 1.562 1vcdA 126 1.925 d.113.1.1 119970 2e2dC 180 2.978 b.40.3.1 131980 1quqB 121 3.114 b.40.4.3 25305 1at0 145 3.442 2oqkA 117 4.157 1at0A 145 4.262 b.86.1.1 28374 2j2zA 218 4.562 b.1.11.1,b.7.2.1 137974,137975 1xyiA 66 5.032 1v1qA 134 5.371 b.40.4.3 113490 3ba3A 145 5.489 1rovA 857 5.772 a.119.1.1,b.12.1.1 97674,97675 1azpA 66 7.243 b.34.13.1 37467 1n0lA 224 8.194 b.1.11.1,b.7.2.1 79744,79745 2ra2A 64 8.645 1l1oC 181 9.364 b.40.4.3 73480 1zq7A 207 10.18 d.309.1.1 125501 3bduA 62 11.08 2z1cA 75 11.20 1d7qA 143 11.33 b.40.4.5 25331 1br9 194 12.13 1qveA 126 13.38 d.24.1.1 104594 1v9fA 325 13.50 d.265.1.3 108448 2axtB 510 14.52 2i5hA 205 14.64 3c8cA 240 16.30 1aunA 208 16.72 b.25.1.1 23900 1c8cA 64 17.26 b.34.13.1 59084 2pi2E 142 17.26 1txyA 104 18.12 b.40.4.3 112791 2ebeA 106 18.96 1sjyA 159 19.23 d.113.1.1 98900 2aefA 234 19.52 2e5yA 133 20.68 3pviA 157 21.81 c.52.1.6 33300 2pviA 157 21.99 c.52.1.6 33302 1bmdA 327 23.33 c.2.1.5,d.162.1.1 30139,42106 1ktgA 138 23.71 d.113.1.1 72972 1rowA 109 23.81 b.1.11.2 97676 1iweA 457 24.37 c.37.1.10 71486 1ub4A 110 24.85 b.34.6.2 88399 1e79H 146 25.89 a.2.10.1,b.93.1.1 15721,28438 1mi8A 158 26.82 b.86.1.2 91279 2oyoA 196 28.06 2qlcA 126 29.03 2e12A 101 30.34 2pcxA 220 30.75 2pi2A 270 31.32 1fl0A 171 32.18 b.40.4.4 25315 3bp1A 290 33.03 2gfaA 119 33.98 b.34.9.1,b.34.9.1 135089,135090 1bquA 215 35.23 b.1.2.1,b.1.2.1 22066,22067 1hztA 190 35.35 d.113.1.2 61459 2v40A 459 35.50 2a19A 175 37.73 1ze3C 205 39.36 b.1.11.1,b.7.2.1 124974,124975 3c6fA 153 39.94 2pqvA 154 40.46 1xweA 151 41.31 b.40.3.3 116125 2bnqD 203 42.06 3cloA 258 43.23 1pbe 394 43.57 1x4rA 99 44.40 1qf5A 431 45.84 c.37.1.10 32212 1z9fA 153 46.74 1pfo 500 47.78 1o7iA 119 48.29 b.40.4.3 86642 1p9bA 442 49.37 c.37.1.10 94385 2pmaA 146 51.71 1uolA 219 52.54 b.2.5.2 99695 2dreA 180 54.09 2aukA 190 54.58 1wlgA 299 56.24 b.152.1.1 114726 1yqfA 203 56.53 d.25.1.1 123880 2qqrA 118 56.65 1ujcA 161 57.92 1avaC 181 58.55 b.42.4.1 25604 1b7yB 785 59.99 a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16301,16302,25312,39311,40780,41456 2prrA 197 61.32 1vkkA 154 61.44 d.109.1.2 108669 1pfoA 500 62.09 f.9.1.1 43826 1ijtA 128 62.29 b.42.1.1 62510 2j21A 219 62.51 1mbyA 88 62.68 d.223.1.1 78931 2vlgA 111 63.27 2v3vA 723 63.99 2c5qA 240 66.29 2cx7A 130 66.74 2d4yA 463 66.92 3ullA 132 68.04 b.40.4.3 25282 1z9lA 128 69.08 1r75A 141 72.02 b.134.1.1 97189 3by7A 100 72.31 1lci 550 72.36 2qwoB 92 74.26 1sxvA 172 74.46 1prtF 98 74.92 b.40.2.1 25140 1l6oA 95 75.87 b.36.1.1 84534 1amuA 563 75.90 e.23.1.1 43351 1wdiA 345 76.14 e.53.1.1 114535 1yqyA 523 76.99 d.92.1.14,d.166.1.1 123903,123904 1zhvA 134 77.41 d.58.18.8,d.58.18.8 125109,125110 1y7tA 327 77.70 c.2.1.5,d.162.1.1 122718,122719 1zn6A 227 77.88 d.303.1.1 125373 1x84A 189 79.66 d.113.1.2 121795 3bwuC 205 79.67 2rb7A 364 79.70 2pbcA 102 80.69 2yvsA 219 80.96 2jxtA 86 81.58 1bdmA 327 86.17 c.2.1.5,d.162.1.1 30137,42104 2ak4D 211 86.28 3ck1A 150 87.76 1s5uA 138 88.60 d.38.1.1 98573 2au7A 175 89.45