# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xyiA 66 0.01784 1c8cA 64 0.02424 b.34.13.1 59084 1j58A 385 1.676 b.82.1.2 71531 2eisA 133 2.095 1r5lA 262 2.238 a.5.3.1,c.13.1.1 97099,97100 2z1cA 75 2.615 1sxvA 172 2.836 1jsuC 84 3.314 j.55.1.1 46339 1vclA 432 3.371 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1xk5A 204 3.394 1yliA 153 3.451 d.38.1.1 123651 1vpmA 169 4.061 d.38.1.1 113967 2uurA 245 4.488 3bduA 62 5.004 2bqxA 173 5.855 1xj4A 119 5.879 d.110.3.2 122027 1ew0A 130 6.052 d.110.3.2 40905 2pfrA 294 6.055 2uubE 162 7.746 d.14.1.1,d.50.1.2 139936,139937 2au7A 175 7.772 3bjoA 103 7.881 2ux0A 143 8.028 2sak 121 8.710 2sakA 121 8.710 d.15.5.1 37711 3c9qA 205 9.297 2q2bA 179 9.387 2ns6A 185 9.480 1twlA 186 10.84 b.40.5.1 112764 2v6vA 156 10.96 1jsdA 319 11.21 b.19.1.2 63258 3bjkA 153 12.17 1orc 71 12.30 1wm3A 72 12.69 d.15.1.1 114736 2os5A 119 12.72 2ra2A 64 15.22 2vqeE 162 16.44 3bwlA 126 16.58 3bp8C 75 18.90 1h6hA 143 19.60 d.189.1.1 65681 1i40A 175 19.80 b.40.5.1 66024 1bb8A 71 21.03 d.10.1.1 37478 1n9lA 109 21.78 d.110.3.6 85468 2glwA 92 22.22 2pr5A 132 22.39 2j0wA 449 22.65 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 2oziA 98 22.80 1xaoA 121 22.95 2bvcA 486 23.47 d.15.9.1,d.128.1.1 129243,129244 2gfaA 119 23.94 b.34.9.1,b.34.9.1 135089,135090 1hfoA 113 24.44 d.80.1.3 61006 1rljA 139 24.65 c.23.5.7 104983 2icjA 233 25.36 2ijaA 295 25.80 1p4uA 153 26.46 b.1.10.2 87780 1t6aA 126 27.63 d.129.8.1 106555 2erfA 209 27.74 b.29.1.4 132287 2imjA 166 29.88 2prdA 174 30.00 b.40.5.1 25435 2v7pA 310 30.65 1vr3A 191 31.93 b.82.1.6 120431 1o4tA 133 32.05 b.82.1.9 86622 2gj3A 120 32.31 6ldhA 329 35.12 c.2.1.5,d.162.1.1 30161,42128 1orcA 71 35.25 a.35.1.2 17054 1bb8 71 35.45 2dhoA 235 36.91 2fwvA 226 38.19 1earA 147 38.25 b.107.1.1,d.58.38.1 64875,64876 2gjgA 248 40.09 1jsmA 325 40.33 b.19.1.2 63264 1o6zA 303 40.48 c.2.1.5,d.162.1.1 81107,81108 1r0uA 148 41.04 b.60.1.5 96741 2ak3A 226 41.38 c.37.1.1,g.41.2.1 31892,45193 2co3A 137 41.75 b.2.3.2 130665 2aukA 190 43.35 2pv4A 145 44.01 2bbkL 125 44.54 g.21.1.1 44882 1hkxA 147 44.69 d.17.4.7 83567 1hs6A 611 46.94 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2ddzA 190 47.51 1x99A 145 48.89 b.97.1.2 114978 2v0uA 146 49.19 1gmuA 143 49.30 b.107.1.1,d.58.38.1 65335,65336 3c2qA 345 49.79 1mi8A 158 50.20 b.86.1.2 91279 2a13A 166 50.25 b.60.1.8 125971 2e5yA 133 50.28 1wkbA 810 50.50 1txoA 237 50.70 d.219.1.1 112781 1ohpA 125 50.92 d.17.4.3 118702 1bywA 110 51.16 d.110.3.6 40912 2viuA 328 51.37 b.19.1.2 23797 2jesA 503 51.38 1r7sA 106 51.48 d.15.4.1 97207 1uxjA 309 52.00 c.2.1.5,d.162.1.1 108112,108113 1v8hA 107 52.18 b.1.18.19 119870 1cdcA 99 52.38 b.1.1.1 19746 1td4A 115 52.41 b.85.2.1 112389 2jfrA 234 52.71 1uesA 191 53.48 a.2.11.1,d.44.1.1 107798,107799 2bvlA 543 54.41 1iwlA 182 56.22 b.125.1.1 83757 2ofcA 142 58.01 2qe7H 135 58.65 1t0fA 276 59.23 a.4.5.27,c.52.1.16 112195,112196 3bcxA 437 61.08 3tssA 194 61.28 b.40.2.2,d.15.6.1 25160,37749 3bqxA 150 61.86 2gysA 419 61.88 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 2h1qA 270 62.32 1g7nA 131 63.51 b.60.1.2 83274 2qrwA 128 64.41 1pfo 500 64.69 3c96A 415 65.27 1gx3A 284 66.70 d.3.1.5 70678 1vqqA 646 67.58 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1rfs 139 67.58 1gcvB 136 67.95 a.1.1.2 15589 2ywnA 157 68.62 1a64A 97 68.99 b.1.1.1 19750 2qe8A 343 70.67 1f3uB 171 72.51 b.65.1.1 27525 1el6A 219 74.55 d.182.1.1 42606 2qf3A 243 75.02 1mngA 203 75.13 a.2.11.1,d.44.1.1 15776,38701 2pbcA 102 75.36 1gcwB 135 75.81 a.1.1.2 15591 1uerA 191 78.01 a.2.11.1,d.44.1.1 107790,107791 1oqqA 106 78.13 d.15.4.1 93422 2awpA 198 79.29 1pfoA 500 79.46 f.9.1.1 43826 3c1mA 473 79.63 2gojA 197 80.13 1m3iA 471 80.59 f.9.1.1 91178 2cb5A 453 81.73 d.3.1.1 37035 1w5rA 278 82.30 d.3.1.5 120643 2hnxA 136 82.62 b.60.1.2 136633 2debA 653 84.02 1dcjA 81 84.35 d.68.3.3 59115 2z2nA 299 85.15 1te7A 103 87.38 b.122.1.7 112404 1d7qA 143 87.54 b.40.4.5 25331 1irdB 146 88.21 a.1.1.2 66287 2bw2A 140 88.35 1sq9A 397 89.08 b.69.4.1 105889