# List of top-scoring protein chains for T0466.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1lmhA 184 2.887 d.167.1.1 74036 1lqwA 183 2.911 d.167.1.1 74210 1q1yA 191 2.932 d.167.1.1 104480 1lm4A 194 2.951 d.167.1.1 84626 2i80A 360 33.94 2i87A 364 34.03 2dlcX 394 39.10 1ja9A 274 41.38 c.2.1.2 62817 2panA 616 65.42 1ng6A 148 67.20 a.182.1.1 85670 2btyA 282 73.48 c.73.1.2 129161 1ogoX 574 89.24 b.133.1.1,b.80.1.10 92925,92926