# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x0cA	549	0.4590		
1zx8A	136	5.481	b.62.1.3	125764
2qkhA	135	6.539		
1qbeA	132	10.07	d.85.1.1	40138
1ooyA	481	10.74	c.124.1.3,c.124.1.2	93388,93389
2okmA	147	11.41		
1uxzA	131	16.93	b.18.1.10	100170
1gsjA	258	17.89	c.73.1.2	70397
2audA	257	18.13		
2gc1A	188	21.65	b.82.1.7	134928
1dfaA	454	21.75	b.86.1.2,d.95.2.2,d.95.2.2	28375,40575,40576
1rloA	271	22.14	c.108.1.10	111864
2nmbA	160	23.08	b.55.1.2	26994
1ygsA	234	24.17	b.26.1.1	23907
1gpr	162	26.33		
3c5tA	122	28.07		
1xhvA	257	29.60	c.52.1.19	109597
1f8aB	167	29.62	b.72.1.1,d.26.1.1	27803,38432
1euwA	152	30.92	b.85.4.1	28349
1ujxA	119	31.31	b.26.1.2	99473
1bfd	528	33.33		
1wriA	93	35.42	d.15.4.1	114838
1u34A	119	35.92	g.76.1.1	107634
1frrA	95	36.95	d.15.4.1	37674
1iueA	98	38.99	d.15.4.1	90697
1nm1G	125	39.31	d.109.1.1	80653
1ddmA	135	39.73	b.55.1.2	26993
1offA	97	39.84	d.15.4.1	86947
1czpA	98	40.26	d.15.4.1	37645
2pwwA	127	42.26		
2jhqA	226	44.20		
1mkiA	330	45.22	e.3.1.2	84994
1htrP	43	52.15	b.50.1.2	26852
1vcvA	226	53.52	c.1.10.1	119988
2e6zA	59	53.54		
2gigA	257	53.56		
1rlmA	271	54.51	c.108.1.10	111860
1e0zA	128	55.02	d.15.4.1	59153
2ahdA	165	59.46	d.159.1.7	126752
1eugA	229	60.63	c.18.1.1	31021
1giqA	413	60.67	d.166.1.1,d.166.1.1	76224,76225
2r5xA	129	66.87		
1fxiA	96	67.88	d.15.4.1	37664
1bdfA	235	67.91	d.74.3.1,d.181.1.1	39727,42602
1udhA	244	68.08	c.18.1.1	31015
1mtpA	323	69.77	e.1.1.1	85107
1euiA	228	72.07	c.18.1.1	31028
2j3xA	431	73.93		
1vctA	205	74.85	a.7.12.1,d.286.1.1	119986,119987
1y6hA	177	76.28	d.167.1.1	116505
1pvtA	238	77.70	c.74.1.1	95189
2qm0A	275	78.65		
1l5wA	796	79.05	c.87.1.4	73605
1wwhA	119	82.38	d.58.7.1	121358
1jjoC	261	84.03		
2bivA	243	85.06	b.34.9.3,b.34.9.3	128592,128593
2oyzA	94	85.17		
2hxmA	223	85.70	c.18.1.1	136857
1rfkA	98	88.93