# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x0cA	549	0.8282		
1zx8A	136	3.716	b.62.1.3	125764
2gc1A	188	4.900	b.82.1.7	134928
1qbeA	132	7.291	d.85.1.1	40138
1gpr	162	11.03		
2pwwA	127	12.14		
1bdfA	235	13.31	d.74.3.1,d.181.1.1	39727,42602
2ok8A	316	13.32		
2p0mA	662	13.38		
2okmA	147	15.30		
1uxzA	131	17.21	b.18.1.10	100170
1dfaA	454	18.76	b.86.1.2,d.95.2.2,d.95.2.2	28375,40575,40576
1ygsA	234	19.79	b.26.1.1	23907
1ujxA	119	21.03	b.26.1.2	99473
1f8aB	167	22.94	b.72.1.1,d.26.1.1	27803,38432
1gprA	162	23.15	b.84.3.1	28267
1ooyA	481	23.75	c.124.1.3,c.124.1.2	93388,93389
3c5tA	122	24.53		
1wriA	93	25.84	d.15.4.1	114838
2qm0A	275	25.97		
1offA	97	26.53	d.15.4.1	86947
1czpA	98	27.72	d.15.4.1	37645
1iueA	98	29.29	d.15.4.1	90697
1nm1G	125	33.04	d.109.1.1	80653
1gsjA	258	35.62	c.73.1.2	70397
2qkhA	135	36.81		
1frrA	95	36.95	d.15.4.1	37674
1giqA	413	40.26	d.166.1.1,d.166.1.1	76224,76225
2audA	257	43.76		
1euwA	152	45.06	b.85.4.1	28349
1we3O	100	45.72	b.35.1.1	109330
1cqxA	403	46.15	a.1.1.2,b.43.4.2,c.25.1.5	15635,25667,31562
2r5xA	129	46.86		
1l5wA	796	51.25	c.87.1.4	73605
1jjoC	261	52.10		
2vcyA	344	52.64		
2gzsA	278	55.71		
1xhvA	257	56.48	c.52.1.19	109597
2oynA	146	57.11		
1rfkA	98	58.84		
1a8pA	258	60.58	b.43.4.2,c.25.1.1	25654,31544
2j3xA	431	61.07		
1an8	208	66.35		
1pvtA	238	66.68	c.74.1.1	95189
1htrP	43	67.81	b.50.1.2	26852
1mkiA	330	68.03	e.3.1.2	84994
1b9hA	388	68.12	c.67.1.4	34488
1t6aA	126	69.83	d.129.8.1	106555
1f3zA	161	70.17	b.84.3.1	28273
2ahdA	165	70.60	d.159.1.7	126752
1y6hA	177	71.01	d.167.1.1	116505
2bivA	243	71.39	b.34.9.3,b.34.9.3	128592,128593
2ayuA	417	71.61	d.305.1.1	127571
1jjfA	268	71.97	c.69.1.2	66765
1fxiA	96	74.42	d.15.4.1	37664
1tejA	64	76.32	g.20.1.1	106815
2nmbA	160	76.73	b.55.1.2	26994
2os0A	188	77.81		
2oyzA	94	78.58		
2fqpA	97	78.99		
2hd9A	145	81.23		
1e0zA	128	81.82	d.15.4.1	59153
3c05A	62	82.28		
1vcvA	226	83.29	c.1.10.1	119988
1ylnA	252	85.44	b.45.2.1,b.45.2.2	123657,123658
1eugA	229	85.52	c.18.1.1	31021
2qjzA	123	85.85		
2a6hA	315	87.64	d.74.3.1,d.181.1.1	126260,126261