# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1x0cA 549 2.600 2pwwA 127 4.799 2okmA 147 5.230 1zx8A 136 5.961 b.62.1.3 125764 1ujxA 119 7.582 b.26.1.2 99473 1qbeA 132 9.476 d.85.1.1 40138 2qkhA 135 10.22 1gpr 162 10.68 2gc1A 188 10.98 b.82.1.7 134928 2bivA 243 14.57 b.34.9.3,b.34.9.3 128592,128593 1f8aB 167 14.80 b.72.1.1,d.26.1.1 27803,38432 1rloA 271 14.97 c.108.1.10 111864 1ooyA 481 16.96 c.124.1.3,c.124.1.2 93388,93389 1mkiA 330 17.27 e.3.1.2 84994 1t6aA 126 17.97 d.129.8.1 106555 1wqgA 185 18.55 1y8oB 128 18.82 b.84.1.1 122759 1tejA 64 19.21 g.20.1.1 106815 1gprA 162 20.94 b.84.3.1 28267 1vj1A 363 21.35 b.35.1.2,c.2.1.1 100794,100795 1bdfA 235 22.16 d.74.3.1,d.181.1.1 39727,42602 2r5xA 129 22.75 2vcyA 344 23.36 3c5tA 122 25.08 1nm1G 125 25.34 d.109.1.1 80653 2ok8A 316 25.57 1sz6B 263 25.99 b.42.2.1,b.42.2.1 112172,112173 3c05A 62 26.75 2ns6A 185 26.91 2arcA 164 27.18 b.82.4.1 28148 1gsjA 258 27.69 c.73.1.2 70397 1su0B 159 28.18 d.224.1.2 106015 2os0A 188 28.73 2g6bA 180 29.00 c.37.1.8 134701 1rlmA 271 30.41 c.108.1.10 111860 1f1xA 322 30.84 d.32.1.3,d.32.1.3 83208,83209 1we3O 100 32.44 b.35.1.1 109330 1xhvA 257 35.40 c.52.1.19 109597 1ygsA 234 35.72 b.26.1.1 23907 2pvpA 367 37.12 1htrP 43 41.62 b.50.1.2 26852 1dfaA 454 43.23 b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 2oziA 98 43.80 2audA 257 43.85 2pil 159 45.40 1is1A 185 45.52 d.67.3.1 83704 1y6hA 177 46.07 d.167.1.1 116505 1gu7A 364 46.59 b.35.1.2,c.2.1.1 83321,83322 1giqA 413 46.93 d.166.1.1,d.166.1.1 76224,76225 2p0kA 212 47.05 2j3xA 431 47.62 2qjzA 123 47.71 1dd5A 185 48.07 d.67.3.1 39564 3c05B 64 48.09 1uxzA 131 48.46 b.18.1.10 100170 2e6zA 59 51.81 1u34A 119 52.30 g.76.1.1 107634 1czpA 98 54.43 d.15.4.1 37645 1kgdA 180 54.56 c.37.1.1 68582 1vctA 205 58.05 a.7.12.1,d.286.1.1 119986,119987 2oynA 146 59.32 2j7mA 149 59.61 1l3iA 192 61.19 c.66.1.22 77676 1wlyA 333 61.44 1l5wA 796 61.71 c.87.1.4 73605 1iseA 185 64.14 d.67.3.1 90691 2qm0A 275 64.69 2brfA 110 65.01 b.26.1.2 128996 1jjfA 268 66.84 c.69.1.2 66765 1a66A 178 67.49 b.2.5.3 22441 1f3zA 161 69.08 b.84.3.1 28273 2nmbA 160 69.14 b.55.1.2 26994 1ge9A 184 70.52 d.67.3.1 60463 1pymA 295 70.69 c.1.12.7 29308 3co5A 143 71.78 1s9rA 410 80.28 d.126.1.4 98758 1a5kC 566 82.11 b.92.1.1,c.1.9.2 28425,29047 1lmmA 40 82.42 g.3.6.2 91080 1wwhA 119 83.46 d.58.7.1 121358 2vbuA 136 84.16 2aaiB 262 84.86 b.42.2.1,b.42.2.1 25561,25562 2do3A 69 84.89 b.34.5.5 131596 1iueA 98 84.90 d.15.4.1 90697 2cx5A 158 86.15 1amxA 180 86.49 b.2.3.1 22410 1b77A 228 89.07 d.131.1.2,d.131.1.2 41362,41363 1fdrA 248 89.24 b.43.4.2,c.25.1.1 25653,31543