# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x0cA	549	2.771		
1ooyA	481	5.298	c.124.1.3,c.124.1.2	93388,93389
2okmA	147	7.942		
2pwwA	127	9.880		
1uxzA	131	10.45	b.18.1.10	100170
1qbeA	132	10.80	d.85.1.1	40138
2qkhA	135	10.84		
1zx8A	136	12.48	b.62.1.3	125764
1gpr	162	19.45		
1rloA	271	21.01	c.108.1.10	111864
2gc1A	188	21.49	b.82.1.7	134928
1iueA	98	21.86	d.15.4.1	90697
1bdfA	235	23.88	d.74.3.1,d.181.1.1	39727,42602
1f8aB	167	26.28	b.72.1.1,d.26.1.1	27803,38432
1htrP	43	26.48	b.50.1.2	26852
1gsjA	258	27.96	c.73.1.2	70397
1ujxA	119	30.12	b.26.1.2	99473
1euwA	152	30.86	b.85.4.1	28349
1offA	97	31.18	d.15.4.1	86947
1czpA	98	32.16	d.15.4.1	37645
2ahdA	165	34.73	d.159.1.7	126752
1frrA	95	36.00	d.15.4.1	37674
1n26A	325	38.05	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
2r5xA	129	38.10		
1mkiA	330	40.78	e.3.1.2	84994
1ygsA	234	42.59	b.26.1.1	23907
1wriA	93	44.73	d.15.4.1	114838
1gprA	162	50.39	b.84.3.1	28267
2bivA	243	52.51	b.34.9.3,b.34.9.3	128592,128593
1xhvA	257	53.90	c.52.1.19	109597
2oo4A	234	54.65		
3c5tA	122	55.04		
2audA	257	56.68		
1wwhA	119	57.06	d.58.7.1	121358
2dqsA	995	57.45		
1vctA	205	58.56	a.7.12.1,d.286.1.1	119986,119987
1t6aA	126	58.74	d.129.8.1	106555
1e0zA	128	58.97	d.15.4.1	59153
1u34A	119	59.19	g.76.1.1	107634
2jhqA	226	62.93		
1rfkA	98	63.48		
1f8yA	157	65.64	c.23.14.1	31395
1rlmA	271	67.53	c.108.1.10	111860
2nmbA	160	68.48	b.55.1.2	26994
2ok8A	316	69.88		
1we3O	100	70.49	b.35.1.1	109330
1nm1G	125	74.32	d.109.1.1	80653
2brfA	110	74.34	b.26.1.2	128996
2obaA	138	75.05		
1xneA	113	79.27	b.122.1.6	115579
1eugA	229	79.33	c.18.1.1	31021
2hd9A	145	79.48		
2qjzA	123	80.96		
2e6zA	59	81.40		
1amxA	180	81.73	b.2.3.1	22410
2gigA	257	82.33		
1jjoC	261	84.33		
1euiA	228	84.71	c.18.1.1	31028
1ddmA	135	86.66	b.55.1.2	26993
1qm9A	198	86.68	d.58.7.1,d.58.7.1	39207,39208
2fgoA	82	87.22