# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x0cA	549	1.999		
1ooyA	481	9.894	c.124.1.3,c.124.1.2	93388,93389
1qbeA	132	10.28	d.85.1.1	40138
2qkhA	135	10.43		
1zx8A	136	10.51	b.62.1.3	125764
1uxzA	131	13.14	b.18.1.10	100170
2okmA	147	15.37		
2gc1A	188	15.61	b.82.1.7	134928
1gsjA	258	21.62	c.73.1.2	70397
1f8aB	167	24.81	b.72.1.1,d.26.1.1	27803,38432
1rloA	271	24.91	c.108.1.10	111864
1ygsA	234	28.75	b.26.1.1	23907
2pwwA	127	31.34		
1euwA	152	33.23	b.85.4.1	28349
1xhvA	257	33.67	c.52.1.19	109597
2jhqA	226	35.25		
2ahdA	165	36.56	d.159.1.7	126752
1bdfA	235	36.70	d.74.3.1,d.181.1.1	39727,42602
2oo4A	234	36.91		
2audA	257	38.10		
2e6zA	59	38.85		
1htrP	43	38.87	b.50.1.2	26852
1f8yA	157	40.53	c.23.14.1	31395
1iueA	98	43.22	d.15.4.1	90697
2dqsA	995	44.30		
1eugA	229	44.46	c.18.1.1	31021
1mkiA	330	45.57	e.3.1.2	84994
1nm1G	125	46.36	d.109.1.1	80653
2gigA	257	46.55		
1gpr	162	48.46		
3c5tA	122	49.38		
1u34A	119	50.05	g.76.1.1	107634
1vctA	205	52.68	a.7.12.1,d.286.1.1	119986,119987
1offA	97	53.14	d.15.4.1	86947
2obaA	138	53.58		
1czpA	98	56.54	d.15.4.1	37645
1euiA	228	57.28	c.18.1.1	31028
2hxmA	223	59.74	c.18.1.1	136857
1frrA	95	60.37	d.15.4.1	37674
1we3O	100	62.97	b.35.1.1	109330
2fgoA	82	63.30		
1an8	208	63.83		
1ujxA	119	64.67	b.26.1.2	99473
1wwhA	119	65.51	d.58.7.1	121358
1rlmA	271	66.10	c.108.1.10	111860
2qjzA	123	69.41		
2oyzA	94	71.18		
2bivA	243	71.71	b.34.9.3,b.34.9.3	128592,128593
2ok8A	316	71.77		
2nmbA	160	74.09	b.55.1.2	26994
1t6aA	126	75.37	d.129.8.1	106555
2hd9A	145	75.45		
1wriA	93	76.31	d.15.4.1	114838
1pvtA	238	80.54	c.74.1.1	95189
1n26A	325	82.46	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
1e0zA	128	82.66	d.15.4.1	59153
1qm9A	198	88.01	d.58.7.1,d.58.7.1	39207,39208