# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x0cA	549	1.826		
1ooyA	481	8.969	c.124.1.3,c.124.1.2	93388,93389
1zx8A	136	10.10	b.62.1.3	125764
2qkhA	135	11.00		
1qbeA	132	13.47	d.85.1.1	40138
1uxzA	131	16.15	b.18.1.10	100170
2okmA	147	16.45		
1gsjA	258	18.21	c.73.1.2	70397
1ygsA	234	20.82	b.26.1.1	23907
2pwwA	127	22.50		
2gc1A	188	22.75	b.82.1.7	134928
1rloA	271	23.22	c.108.1.10	111864
1euwA	152	28.91	b.85.4.1	28349
1f8aB	167	30.57	b.72.1.1,d.26.1.1	27803,38432
2ahdA	165	31.74	d.159.1.7	126752
2audA	257	31.79		
2e6zA	59	34.34		
1nm1G	125	34.87	d.109.1.1	80653
1xhvA	257	36.42	c.52.1.19	109597
1htrP	43	37.87	b.50.1.2	26852
1bdfA	235	38.35	d.74.3.1,d.181.1.1	39727,42602
1wwhA	119	40.58	d.58.7.1	121358
1gpr	162	42.61		
2dqsA	995	44.86		
2oo4A	234	45.04		
1u34A	119	46.95	g.76.1.1	107634
1iueA	98	47.41	d.15.4.1	90697
2gigA	257	47.44		
3c5tA	122	55.24		
1offA	97	55.80	d.15.4.1	86947
1ujxA	119	56.47	b.26.1.2	99473
1n26A	325	57.23	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
1vctA	205	57.87	a.7.12.1,d.286.1.1	119986,119987
1rlmA	271	61.19	c.108.1.10	111860
1czpA	98	63.06	d.15.4.1	37645
2ok8A	316	63.07		
2jhqA	226	64.91		
1frrA	95	67.06	d.15.4.1	37674
2qjzA	123	67.40		
1e0zA	128	67.48	d.15.4.1	59153
1f8yA	157	68.03	c.23.14.1	31395
1we3O	100	68.90	b.35.1.1	109330
1dfaA	454	70.33	b.86.1.2,d.95.2.2,d.95.2.2	28375,40575,40576
2hd9A	145	78.56		
1t6aA	126	81.16	d.129.8.1	106555
1eugA	229	81.85	c.18.1.1	31021
2obaA	138	82.27		
1an8	208	83.50		
1y8oB	128	83.53	b.84.1.1	122759
2oyzA	94	84.43		
1ddmA	135	85.87	b.55.1.2	26993
1wriA	93	86.21	d.15.4.1	114838
1rrvA	416	86.91	c.87.1.5	105083
2r5xA	129	89.59		
1zmpA	32	89.67		
2nmbA	160	89.77	b.55.1.2	26994