# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pwwA	127	14.86		
2qkhA	135	18.89		
2vdaA	828	20.92		
2r5xA	129	21.07		
1u34A	119	22.77	g.76.1.1	107634
1rloA	271	25.94	c.108.1.10	111864
1xneA	113	26.50	b.122.1.6	115579
2fqpA	97	32.32		
1zx8A	136	32.32	b.62.1.3	125764
1a4iA	301	34.53	c.2.1.7,c.58.1.2	30278,33926
1oftA	161	35.96	c.37.1.22	86968
1htrP	43	37.03	b.50.1.2	26852
2ns6A	185	38.08		
2qaiA	111	38.73		
1ujxA	119	42.15	b.26.1.2	99473
1x0cA	549	47.02		
1euwA	152	48.18	b.85.4.1	28349
2ahdA	165	52.64	d.159.1.7	126752
1wqgA	185	63.11		
1iueA	98	66.66	d.15.4.1	90697
1m93B	245	67.53		
1mtpA	323	70.28	e.1.1.1	85107
1ygsA	234	71.18	b.26.1.1	23907
1b0aA	288	71.22	c.2.1.7,c.58.1.2	30286,33934
1udhA	244	72.31	c.18.1.1	31015
1wr8A	231	73.66	c.108.1.10	114836
2c1wA	292	79.86	d.294.1.1	129644
1wwhA	119	80.50	d.58.7.1	121358
1k4mA	213	83.21	c.26.1.3	77258
1m6nA	802	83.67	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
2rccA	346	84.30		
1molA	94	87.74	d.17.1.1	37988