# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ooyA	481	3.835	c.124.1.3,c.124.1.2	93388,93389
1x0cA	549	4.927		
2okmA	147	5.522		
2pwwA	127	10.60		
1qbeA	132	13.04	d.85.1.1	40138
2qkhA	135	13.47		
1zx8A	136	13.47	b.62.1.3	125764
1iueA	98	20.04	d.15.4.1	90697
1czpA	98	23.45	d.15.4.1	37645
1rloA	271	25.41	c.108.1.10	111864
1gpr	162	26.70		
2ahdA	165	30.53	d.159.1.7	126752
2r5xA	129	30.89		
1mkiA	330	31.56	e.3.1.2	84994
1uxzA	131	32.10	b.18.1.10	100170
1offA	97	32.39	d.15.4.1	86947
1bdfA	235	32.39	d.74.3.1,d.181.1.1	39727,42602
1htrP	43	33.75	b.50.1.2	26852
1f8yA	157	34.83	c.23.14.1	31395
1gsjA	258	35.16	c.73.1.2	70397
1ujxA	119	37.70	b.26.1.2	99473
2obaA	138	41.10		
1ygsA	234	43.54	b.26.1.1	23907
1frrA	95	45.07	d.15.4.1	37674
2nmbA	160	48.82	b.55.1.2	26994
3c5tA	122	50.12		
1u34A	119	52.51	g.76.1.1	107634
1iseA	185	52.67	d.67.3.1	90691
1y6hA	177	53.83	d.167.1.1	116505
1rfkA	98	54.49		
2bivA	243	55.41	b.34.9.3,b.34.9.3	128592,128593
1wriA	93	56.17	d.15.4.1	114838
2oo4A	234	61.45		
1qm9A	198	71.61	d.58.7.1,d.58.7.1	39207,39208
1eugA	229	73.49	c.18.1.1	31021
1dfaA	454	73.61	b.86.1.2,d.95.2.2,d.95.2.2	28375,40575,40576
1b9hA	388	73.75	c.67.1.4	34488
2gc1A	188	74.25	b.82.1.7	134928
2audA	257	74.63		
3co5A	143	75.58		
1gprA	162	76.91	b.84.3.1	28267
1nm1G	125	78.14	d.109.1.1	80653
1euwA	152	80.30	b.85.4.1	28349
1bfd	528	81.27		
1wqgA	185	83.42		
2qjzA	123	84.24		
1we3O	100	85.68	b.35.1.1	109330