# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1x0cA 549 0.3684 2rdqA 288 0.5173 1m7vA 363 1.262 d.174.1.1 78748 1euwA 152 3.160 b.85.4.1 28349 1euiA 228 4.255 c.18.1.1 31028 1a6cA 513 4.267 b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 2rghA 571 4.858 1s9rA 410 5.964 d.126.1.4 98758 1m15A 357 5.975 a.83.1.1,d.128.1.2 78368,78369 1zmbA 290 7.695 c.23.10.7 125355 1yw5A 177 7.740 2rebA 352 8.151 c.37.1.11,d.48.1.1 32282,38767 2booA 247 8.632 1zx8A 136 9.346 b.62.1.3 125764 1sc6A 404 9.871 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1or0B 528 11.03 1xsjA 778 11.26 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 2a25A 193 12.70 1flzA 228 12.91 c.18.1.1 31027 1y1xA 191 14.39 a.39.1.8 116374 1mkiA 330 14.65 e.3.1.2 84994 1mppA 361 14.71 b.50.1.2 26856 1a9xB 379 15.54 c.8.3.1,c.23.16.1 30732,31409 1gpr 162 16.13 1suwA 249 16.58 e.52.1.1 106027 1n0uA 842 17.00 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1nj4A 363 18.03 b.105.1.1,e.3.1.1 80545,80546 1jftA 340 20.07 a.35.1.5,c.93.1.1 66652,66653 1edzA 320 20.80 c.2.1.7,c.58.1.2 30287,33935 2gl6A 392 20.94 2b30A 301 21.06 c.108.1.10 127759 1f8yA 157 22.46 c.23.14.1 31395 2bivA 243 23.56 b.34.9.3,b.34.9.3 128592,128593 1ehaA 558 24.72 b.1.18.2,b.71.1.1,c.1.8.1 21859,27786,28773 1u0tA 307 24.74 e.52.1.1 107567 1qm9A 198 25.23 d.58.7.1,d.58.7.1 39207,39208 1k3iA 656 25.25 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1gsjA 258 25.30 c.73.1.2 70397 1tf5A 844 25.32 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2akaB 299 26.30 c.37.1.8 126914 1eugA 229 26.35 c.18.1.1 31021 1rfkA 98 26.39 2r98A 456 26.87 1wwhA 119 27.67 d.58.7.1 121358 1rpa 342 28.29 1czpA 98 28.60 d.15.4.1 37645 1c30B 382 28.82 c.8.3.1,c.23.16.1 30736,31413 1gw9A 388 30.22 c.1.15.3 70658 1pv1A 299 32.05 c.69.1.34 111639 1vpwA 340 32.86 a.35.1.5,c.93.1.1 17087,35680 1qbeA 132 34.74 d.85.1.1 40138 2qkhA 135 35.25 1mqoA 227 35.49 d.157.1.1 103846 2a6hA 315 35.80 d.74.3.1,d.181.1.1 126260,126261 2nyhA 117 36.15 d.58.55.1 138813 1gxmA 332 38.04 a.102.5.1 76371 1poxA 585 40.10 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2p0mA 662 40.13 1iueA 98 40.43 d.15.4.1 90697 1n7vA 555 42.00 b.126.1.1 85377 2jhqA 226 42.37 2hxmA 223 42.38 c.18.1.1 136857 2p0kA 212 44.24 1ef1A 294 45.08 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1nf5B 286 45.51 c.68.1.2 80454 2zbvA 263 45.56 2b8mA 117 46.21 b.82.1.18 128092 2f2hA 773 49.08 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1umkA 275 50.32 b.43.4.2,c.25.1.1 113312,113313 1ei1A 391 50.64 d.14.1.3,d.122.1.2 37570,41104 1xa0A 328 51.39 b.35.1.2,c.2.1.1 115021,115022 1zdsA 336 51.72 b.6.1.3,b.6.1.3 124952,124953 1xipA 388 52.30 b.69.14.1 115360 1eq6A 189 52.71 d.107.1.1 40796 1moqA 368 53.90 c.80.1.1 35302 1uwcA 261 54.67 c.69.1.17 100101 1es6A 296 54.73 b.31.1.1,b.31.1.1 83048,83049 2bazA 142 55.00 2aaoA 166 55.64 2qu7A 288 56.07 1i2cA 404 56.39 c.2.1.2 83666 1ezm 301 58.16 1ygsA 234 58.17 b.26.1.1 23907 2vcyA 344 59.16 1atgA 231 60.59 c.94.1.1 35834 1n7hA 381 60.67 c.2.1.2 80250 1k77A 260 60.92 c.1.15.5 72096 2pwwA 127 61.50 2b3rA 134 62.86 1qrrA 394 63.10 c.2.1.2 29824 1nnsA 326 63.88 c.88.1.1 85910 1vh0A 161 65.31 c.116.1.3 100626 1c3oB 382 66.64 c.8.3.1,c.23.16.1 30744,31421 2gc1A 188 67.31 b.82.1.7 134928 3bb6A 127 67.52 1b8rA 108 68.17 a.39.1.4 17201 1nm1G 125 69.74 d.109.1.1 80653 1b0aA 288 71.18 c.2.1.7,c.58.1.2 30286,33934 2okmA 147 71.24 2cu2A 337 71.86 1x8mA 288 72.47 b.82.1.13 109516 1bfd 528 72.60 1zu0A 529 72.97 1vctA 205 73.65 a.7.12.1,d.286.1.1 119986,119987 1o7fA 469 73.79 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2hd9A 145 74.65 1vkpA 383 77.02 d.126.1.6 108686 2dldA 337 77.04 c.2.1.4,c.23.12.1 30099,31359 1sflA 238 78.50 c.1.10.1 112077 1as6A 343 78.60 b.6.1.3,b.6.1.3 23090,23091 1uhnA 189 79.31 a.39.1.5 99399 1ujxA 119 79.90 b.26.1.2 99473 2oo4A 234 80.39 1gprA 162 82.41 b.84.3.1 28267 1snrA 341 84.15 b.6.1.3,b.6.1.3 105823,105824 2g8cO 251 84.39 2d80A 318 84.61 2i5nH 258 85.16 b.41.1.1,f.23.10.1 137064,137065 1offA 97 85.18 d.15.4.1 86947 2polA 366 86.34 d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 2fafA 608 89.02 1f8aB 167 89.02 b.72.1.1,d.26.1.1 27803,38432 2hs3A 603 89.04 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 3cbwA 353 89.75