# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x0cA	549	3.426		
1ooyA	481	9.751	c.124.1.3,c.124.1.2	93388,93389
1zx8A	136	10.96	b.62.1.3	125764
2qkhA	135	13.35		
2okmA	147	13.72		
1qbeA	132	14.10	d.85.1.1	40138
1ygsA	234	21.94	b.26.1.1	23907
1gsjA	258	22.68	c.73.1.2	70397
1iueA	98	23.49	d.15.4.1	90697
1rloA	271	26.50	c.108.1.10	111864
2ahdA	165	28.94	d.159.1.7	126752
2pwwA	127	29.37		
1czpA	98	31.64	d.15.4.1	37645
2gc1A	188	33.11	b.82.1.7	134928
1eugA	229	33.32	c.18.1.1	31021
1f8yA	157	34.25	c.23.14.1	31395
2obaA	138	36.30		
1mkiA	330	37.64	e.3.1.2	84994
1gpr	162	38.22		
2audA	257	39.38		
2nmbA	160	43.18	b.55.1.2	26994
1htrP	43	43.18	b.50.1.2	26852
1offA	97	45.59	d.15.4.1	86947
1euiA	228	46.72	c.18.1.1	31028
2oo4A	234	46.88		
1u34A	119	47.50	g.76.1.1	107634
1uxzA	131	49.27	b.18.1.10	100170
1wriA	93	49.35	d.15.4.1	114838
2jhqA	226	50.26		
1ujxA	119	51.62	b.26.1.2	99473
3c5tA	122	53.29		
2bivA	243	54.52	b.34.9.3,b.34.9.3	128592,128593
1frrA	95	55.79	d.15.4.1	37674
1a5kC	566	56.97	b.92.1.1,c.1.9.2	28425,29047
2hxmA	223	59.84	c.18.1.1	136857
1wwhA	119	60.63	d.58.7.1	121358
2hd9A	145	61.00		
1xhvA	257	61.04	c.52.1.19	109597
1rfkA	98	61.18		
1nm1G	125	61.45	d.109.1.1	80653
1dfaA	454	63.20	b.86.1.2,d.95.2.2,d.95.2.2	28375,40575,40576
1bdfA	235	66.56	d.74.3.1,d.181.1.1	39727,42602
1f8aB	167	66.86	b.72.1.1,d.26.1.1	27803,38432
1udhA	244	67.52	c.18.1.1	31015
1euwA	152	69.68	b.85.4.1	28349
1bfd	528	76.99		
2a25A	193	77.69		
2fgoA	82	79.45		
3co5A	143	84.37		
1we3O	100	88.46	b.35.1.1	109330
1mtpA	323	88.76	e.1.1.1	85107