# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x0cA	549	2.589		
1zx8A	136	8.938	b.62.1.3	125764
1qbeA	132	11.70	d.85.1.1	40138
2gc1A	188	13.22	b.82.1.7	134928
2okmA	147	19.17		
1ooyA	481	20.49	c.124.1.3,c.124.1.2	93388,93389
2qkhA	135	21.17		
2pwwA	127	22.90		
2jhqA	226	24.66		
1gpr	162	24.67		
1euwA	152	24.85	b.85.4.1	28349
1ygsA	234	26.78	b.26.1.1	23907
1uxzA	131	30.19	b.18.1.10	100170
1rlmA	271	30.57	c.108.1.10	111860
1gsjA	258	31.17	c.73.1.2	70397
1rloA	271	31.27	c.108.1.10	111864
2audA	257	31.83		
2nmbA	160	35.92	b.55.1.2	26994
1eugA	229	40.26	c.18.1.1	31021
1ujxA	119	43.43	b.26.1.2	99473
1f8aB	167	44.07	b.72.1.1,d.26.1.1	27803,38432
1wwhA	119	45.08	d.58.7.1	121358
1udhA	244	47.61	c.18.1.1	31015
1euiA	228	49.87	c.18.1.1	31028
1mkiA	330	50.16	e.3.1.2	84994
1nm1G	125	55.07	d.109.1.1	80653
1dfaA	454	57.23	b.86.1.2,d.95.2.2,d.95.2.2	28375,40575,40576
2hxmA	223	58.76	c.18.1.1	136857
1xhvA	257	59.35	c.52.1.19	109597
1iueA	98	60.19	d.15.4.1	90697
2p0mA	662	60.32		
1wriA	93	62.97	d.15.4.1	114838
1oftA	161	64.31	c.37.1.22	86968
2e6zA	59	64.93		
1we3O	100	66.48	b.35.1.1	109330
1ddmA	135	67.45	b.55.1.2	26993
2r5xA	129	67.76		
1u34A	119	69.00	g.76.1.1	107634
1vctA	205	69.96	a.7.12.1,d.286.1.1	119986,119987
2a25A	193	71.62		
1n26A	325	73.61	b.1.1.4,b.1.2.1,b.1.2.1	79850,79851,79852
1an8	208	76.11		
1czpA	98	76.54	d.15.4.1	37645
3c5tA	122	76.87		
2g6bA	180	77.17	c.37.1.8	134701
2hd9A	145	81.91		
2booA	247	82.69		
2obaA	138	82.70		
1bdfA	235	84.60	d.74.3.1,d.181.1.1	39727,42602
2dqsA	995	88.52		
1giqA	413	89.31	d.166.1.1,d.166.1.1	76224,76225