# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x0cA	549	5.866		
1qbeA	132	7.808	d.85.1.1	40138
2gc1A	188	12.06	b.82.1.7	134928
1zx8A	136	12.43	b.62.1.3	125764
2okmA	147	13.19		
2audA	257	18.94		
1rloA	271	20.30	c.108.1.10	111864
2pwwA	127	20.45		
2qkhA	135	23.13		
1mkiA	330	26.15	e.3.1.2	84994
1uxzA	131	28.50	b.18.1.10	100170
1ooyA	481	31.01	c.124.1.3,c.124.1.2	93388,93389
1ygsA	234	32.62	b.26.1.1	23907
1y8oB	128	34.93	b.84.1.1	122759
1htrP	43	35.28	b.50.1.2	26852
1xhvA	257	35.75	c.52.1.19	109597
1gpr	162	35.88		
2oo4A	234	41.99		
1an8	208	42.70		
1t6aA	126	45.09	d.129.8.1	106555
3c5tA	122	48.87		
1gsjA	258	49.89	c.73.1.2	70397
1ujxA	119	51.43	b.26.1.2	99473
1f8aB	167	52.86	b.72.1.1,d.26.1.1	27803,38432
2gigA	257	54.81		
1nm1G	125	59.38	d.109.1.1	80653
1b9hA	388	66.33	c.67.1.4	34488
2bivA	243	66.38	b.34.9.3,b.34.9.3	128592,128593
2dqsA	995	67.83		
1dfaA	454	70.17	b.86.1.2,d.95.2.2,d.95.2.2	28375,40575,40576
1wqgA	185	71.48		
1rlmA	271	71.58	c.108.1.10	111860
2obaA	138	74.45		
1we3O	100	81.19	b.35.1.1	109330
2ns6A	185	83.99		
1amxA	180	84.98	b.2.3.1	22410
1qm9A	198	85.19	d.58.7.1,d.58.7.1	39207,39208