# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1x0cA	549	3.230		
2okmA	147	10.68		
1zx8A	136	11.15	b.62.1.3	125764
2qkhA	135	14.74		
2gc1A	188	16.03	b.82.1.7	134928
1qbeA	132	16.07	d.85.1.1	40138
1gsjA	258	18.80	c.73.1.2	70397
1ooyA	481	19.02	c.124.1.3,c.124.1.2	93388,93389
1ygsA	234	20.91	b.26.1.1	23907
2ns6A	185	21.11		
2audA	257	25.66		
1htrP	43	34.45	b.50.1.2	26852
2pwwA	127	34.95		
1uxzA	131	35.00	b.18.1.10	100170
1wwhA	119	35.43	d.58.7.1	121358
1y8oB	128	36.28	b.84.1.1	122759
2ahdA	165	36.80	d.159.1.7	126752
1ujxA	119	41.49	b.26.1.2	99473
1nm1G	125	41.65	d.109.1.1	80653
2oo4A	234	41.71		
1we3O	100	41.97	b.35.1.1	109330
1an8	208	42.13		
1gpr	162	42.37		
1xhvA	257	45.92	c.52.1.19	109597
2obaA	138	47.01		
3c5tA	122	49.05		
1u34A	119	49.16	g.76.1.1	107634
1iseA	185	49.29	d.67.3.1	90691
1rrvA	416	57.07	c.87.1.5	105083
2gigA	257	57.62		
2bivA	243	58.71	b.34.9.3,b.34.9.3	128592,128593
2a25A	193	60.12		
1mtpA	323	61.17	e.1.1.1	85107
1amxA	180	61.77	b.2.3.1	22410
1t6aA	126	62.66	d.129.8.1	106555
2e6zA	59	65.53		
2dqsA	995	69.55		
1f8aB	167	70.41	b.72.1.1,d.26.1.1	27803,38432
1mkiA	330	70.92	e.3.1.2	84994
1iueA	98	71.69	d.15.4.1	90697
2qjzA	123	71.91		
1rlmA	271	72.96	c.108.1.10	111860
1a6cA	513	73.36	b.121.4.2,b.121.4.2,b.121.4.2	23296,23297,23298
2jhqA	226	77.30		
2pgzA	230	80.19		
1vctA	205	80.62	a.7.12.1,d.286.1.1	119986,119987
1rloA	271	83.63	c.108.1.10	111864
1ek8A	185	88.15	d.67.3.1	59444
1wqgA	185	89.18		
1qm9A	198	89.65	d.58.7.1,d.58.7.1	39207,39208