# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qkhA	135	1.798		
1u34A	119	5.981	g.76.1.1	107634
1oftA	161	13.29	c.37.1.22	86968
2pwwA	127	14.33		
1dfaA	454	15.88	b.86.1.2,d.95.2.2,d.95.2.2	28375,40575,40576
2r5xA	129	22.13		
1euwA	152	26.00	b.85.4.1	28349
3c5tA	122	26.67		
2okmA	147	29.66		
1ee9A	320	30.99	c.2.1.7,c.58.1.2	30288,33936
1zx8A	136	33.17	b.62.1.3	125764
1molA	94	36.56	d.17.1.1	37988
2j3xA	431	36.78		
1k6wA	426	37.27	b.92.1.2,c.1.9.5	68236,68237
1a4iA	301	40.89	c.2.1.7,c.58.1.2	30278,33926
2vdaA	828	42.48		
2c2xA	281	43.87		
1vheA	373	44.31	b.49.3.1,c.56.5.4	100669,100670
1b0aA	288	44.64	c.2.1.7,c.58.1.2	30286,33934
1kgnA	329	51.66	a.25.1.2	68584
1o0pA	104	56.34	d.58.7.1	86535
1ujxA	119	56.63	b.26.1.2	99473
1rloA	271	57.59	c.108.1.10	111864
1wriA	93	58.38	d.15.4.1	114838
1k8rB	110	58.52	d.15.1.5	72180
1pnoA	180	60.46	c.31.1.4	94953
1furA	467	61.30	a.127.1.1	19403
1jjoC	261	61.79		
1iueA	98	62.85	d.15.4.1	90697
1r2fA	319	63.75	a.25.1.2	16800
2ahdA	165	65.80	d.159.1.7	126752
2brfA	110	66.29	b.26.1.2	128996
2gmgA	105	68.23		
2qm0A	275	68.23		
1yueA	427	71.47		
1frrA	95	73.19	d.15.4.1	37674
1x0cA	549	74.13		
1ex2A	189	74.97	c.51.4.2	33225
2azwA	148	75.58	d.113.1.1	127615
1o6dA	163	78.08	c.116.1.3	92567
2ns6A	185	78.30		
2b1xA	470	82.70	b.33.1.2,d.129.3.3	127675,127676
1fuqA	472	83.84	a.127.1.1	19405
1iseA	185	85.22	d.67.3.1	90691
1pbeA	394	86.85	c.3.1.2,d.16.1.2	30338,37869