# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1gsjA	258	4.045	c.73.1.2	70397
2qkhA	135	11.54		
2pwwA	127	18.65		
1ee9A	320	23.63	c.2.1.7,c.58.1.2	30288,33936
1oftA	161	24.84	c.37.1.22	86968
1ujxA	119	25.40	b.26.1.2	99473
1ooyA	481	31.64	c.124.1.3,c.124.1.2	93388,93389
1iueA	98	36.56	d.15.4.1	90697
2r5xA	129	37.84		
1euwA	152	45.97	b.85.4.1	28349
2brfA	110	47.60	b.26.1.2	128996
2ns6A	185	50.56		
1zx8A	136	51.96	b.62.1.3	125764
1wriA	93	59.48	d.15.4.1	114838
1pda	315	59.88		
1i2kA	269	64.86	e.17.1.1	90661
1czpA	98	64.98	d.15.4.1	37645
3cbtA	237	65.79		
1e0zA	128	68.09	d.15.4.1	59153
2a8eA	220	68.34	d.296.1.1	126397
1qd1A	325	68.60	d.58.34.1,d.58.34.1	39493,39494
1bdfA	235	70.78	d.74.3.1,d.181.1.1	39727,42602
1rloA	271	72.40	c.108.1.10	111864
2okmA	147	72.66		
1y6hA	177	73.78	d.167.1.1	116505