# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vbuA	136	6.318		
2pwwA	127	12.05		
1hpcA	131	17.92	b.84.1.1	28221
1zkoA	136	17.96		
2govA	195	21.53	d.60.1.4	135447
1atgA	231	23.59	c.94.1.1	35834
1hz6A	72	23.81	d.15.7.1	61429
1g8kB	133	26.77	b.33.1.1	24435
2gigA	257	27.70		
2audA	257	29.87		
1u34A	119	30.18	g.76.1.1	107634
2r5xA	129	30.33		
2aefA	234	32.10		
1xj4A	119	34.51	d.110.3.2	122027
1f3zA	161	36.27	b.84.3.1	28273
2qkhA	135	36.76		
2rdyA	803	36.85		
2jozA	135	38.09		
2a6hA	315	38.13	d.74.3.1,d.181.1.1	126260,126261
1t6aA	126	38.30	d.129.8.1	106555
1doiA	128	39.41	d.15.4.1	37676
2eabA	899	42.73		
1b77A	228	44.17	d.131.1.2,d.131.1.2	41362,41363
1vctA	205	44.84	a.7.12.1,d.286.1.1	119986,119987
2nsfA	261	45.94		
1hl9A	449	47.78	b.71.1.3,c.1.8.11	90650,90651
1bdfA	235	56.21	d.74.3.1,d.181.1.1	39727,42602
1sg1X	161	58.77	g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1	105515,105516,105517,105518
2hsiA	282	59.29		
1y4wA	518	59.85	b.29.1.19,b.67.2.3	116470,116471
1xkpC	143	61.44	d.198.1.1	122088
2iqgA	406	61.95	b.50.1.2	137588
1pv5A	264	64.80	d.251.1.1	95150
1molA	94	64.84	d.17.1.1	37988
1gprA	162	65.49	b.84.3.1	28267
1gpr	162	67.81		
1pn2A	280	72.41	d.38.1.4,d.38.1.4	94930,94931
1sr8A	298	77.19	e.54.1.1	105959
2pqgA	265	77.26		
2oynA	146	81.88		
1a70A	97	84.78	d.15.4.1	37678
1x0cA	549	85.82		
2cx4A	164	87.92	c.47.1.10	130973
2gpyA	233	87.93