# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vbuA	136	4.404		
2rdyA	803	11.05		
2eabA	899	11.15		
1doiA	128	11.45	d.15.4.1	37676
1t6aA	126	17.61	d.129.8.1	106555
1zkoA	136	24.86		
2pwwA	127	25.03		
3cihA	739	25.41		
2jozA	135	27.28		
1ygsA	234	27.80	b.26.1.1	23907
1xj4A	119	27.80	d.110.3.2	122027
1f3zA	161	30.12	b.84.3.1	28273
2aefA	234	38.85		
1gprA	162	40.68	b.84.3.1	28267
1gpr	162	41.31		
2audA	257	41.83		
2gvhA	288	41.98	d.38.1.1,d.38.1.1	135776,135777
1rwzA	245	42.78	d.131.1.2,d.131.1.2	98005,98006
2nsfA	261	43.20		
1vctA	205	43.69	a.7.12.1,d.286.1.1	119986,119987
1atgA	231	44.67	c.94.1.1	35834
1x54A	434	44.70		
2gigA	257	44.83		
1hpcA	131	45.43	b.84.1.1	28221
1grjA	158	45.82	a.2.1.1,d.26.1.2	15691,38433
2ns6A	185	51.78		
1qexA	288	56.48	b.32.1.1	24425
1bdfA	235	62.89	d.74.3.1,d.181.1.1	39727,42602
1molA	94	63.78	d.17.1.1	37988
2oynA	146	65.47		
2a6hA	315	67.18	d.74.3.1,d.181.1.1	126260,126261
1qo7A	394	67.26	c.69.1.11	34697
1y4wA	518	67.93	b.29.1.19,b.67.2.3	116470,116471
2r5xA	129	68.81		
1hl9A	449	72.97	b.71.1.3,c.1.8.11	90650,90651
1xkpC	143	76.30	d.198.1.1	122088
2o9uX	97	77.17	d.17.1.1	138960
2bv4A	113	78.72		
1x65A	89	79.15		
2d8aA	348	81.21		
1jx7A	117	83.11	c.114.1.1	77195
1pv5A	264	83.94	d.251.1.1	95150
1uxzA	131	83.98	b.18.1.10	100170
1ltlA	279	85.65	b.40.4.11	84701
1sg1X	161	87.67	g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1	105515,105516,105517,105518
2ok8A	316	88.72		
1jyhA	157	89.17	d.60.1.3	71956