# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oziA	98	8.407		
2vbuA	136	10.16		
1t6aA	126	11.26	d.129.8.1	106555
2pwwA	127	15.11		
1mrjA	247	17.62	d.165.1.1	42177
1molA	94	18.82	d.17.1.1	37988
2pqgA	265	19.35		
1n67A	359	21.97	b.2.3.4,b.2.3.4	85354,85355
1grjA	158	22.85	a.2.1.1,d.26.1.2	15691,38433
1b77A	228	23.37	d.131.1.2,d.131.1.2	41362,41363
2o9uX	97	25.21	d.17.1.1	138960
1yt5A	258	26.37		
2oqaA	241	27.34		
1wqgA	185	29.16		
1u34A	119	29.63	g.76.1.1	107634
1zkoA	136	30.34		
2gc1A	188	31.34	b.82.1.7	134928
1xj4A	119	31.87	d.110.3.2	122027
1l6pA	125	32.06	b.1.17.1	73626
3clqA	421	32.81		
2fctA	313	33.44	b.82.2.9	133282
1pv5A	264	35.26	d.251.1.1	95150
1dkzA	219	36.72	a.8.4.1,b.130.1.1	90345,90346
1bdfA	235	37.39	d.74.3.1,d.181.1.1	39727,42602
2pfrA	294	39.64		
1frdA	98	40.36	d.15.4.1	37648
2cx4A	164	40.64	c.47.1.10	130973
2r5xA	129	41.12		
1ygsA	234	42.61	b.26.1.1	23907
1atgA	231	42.64	c.94.1.1	35834
2rdyA	803	44.89		
1vctA	205	45.91	a.7.12.1,d.286.1.1	119986,119987
2qu7A	288	47.12		
2vc4A	267	47.99		
1x82A	190	49.09	b.82.1.7	114955
2a1xA	308	49.68	b.82.2.9	126022
1r17A	343	49.68	b.2.3.4,b.2.3.4	96796,96797
1f3zA	161	50.41	b.84.3.1	28273
1pa7A	130	50.87	a.40.1.1	94410
2pa8D	265	51.73		
1e42A	258	51.90	b.1.10.1,d.105.1.1	22316,40792
1ofzA	312	53.96	b.68.8.1	86978
1v70A	105	54.45	b.82.1.9	113555
2gu9A	113	54.67		
2aefA	234	54.72		
1hpcA	131	56.13	b.84.1.1	28221
1rfkA	98	57.73		
2a2nA	176	57.86	b.62.1.1	126041
2gj3A	120	57.98		
1n9lA	109	58.96	d.110.3.6	85468
1jhfA	202	60.30	a.4.5.2,b.87.1.1	63057,63058
2qkhA	135	60.73		
1mrj	247	62.37		
2oasA	436	63.69		
3ctkA	248	63.79		
1j1qA	261	64.47	d.165.1.1	90768
2v0uA	146	64.51		
2jrnA	163	65.05		
3bb6A	127	66.07		
2jozA	135	66.92		
2hmaA	376	68.19		
2iqgA	406	69.16	b.50.1.2	137588
2pn0A	141	71.87		
1y6hA	177	72.47	d.167.1.1	116505
2p8tA	200	73.68		
2exnA	136	75.15	b.165.1.1	132562
2audA	257	75.20		
1gprA	162	75.76	b.84.3.1	28267
2op6A	152	76.01		
1we3O	100	76.12	b.35.1.1	109330
2azeA	155	76.25	e.63.1.1	127605
1doiA	128	76.69	d.15.4.1	37676
1gpr	162	77.75		
1sr4B	261	79.25	d.151.1.1	105949
2cm4A	150	80.77		
1m55A	197	80.98	d.89.1.3	74469
1z0sA	278	81.89	e.52.1.1	124328
1xkpC	143	82.62	d.198.1.1	122088
1knwA	425	83.03	b.49.2.3,c.1.6.1	90969,90970
2vt8A	153	83.55		
2gigA	257	84.03		
1s68A	249	84.11	d.142.2.4	98591
1pwhA	327	84.14	c.79.1.1	95224
1a6cA	513	84.34	b.121.4.2,b.121.4.2,b.121.4.2	23296,23297,23298
1s7mA	174	85.52	b.144.1.1	98649
1rlw	126	87.31		
2b7uA	257	87.48		
2bv4A	113	88.65