# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pwwA	127	8.232		
2vbuA	136	12.93		
2aefA	234	19.61		
1ygsA	234	24.19	b.26.1.1	23907
1vctA	205	27.22	a.7.12.1,d.286.1.1	119986,119987
2r5xA	129	28.47		
1atgA	231	36.28	c.94.1.1	35834
1doiA	128	37.21	d.15.4.1	37676
1xj4A	119	42.50	d.110.3.2	122027
2gigA	257	44.99		
1t6aA	126	46.53	d.129.8.1	106555
1hyeA	313	46.86	c.2.1.5,d.162.1.1	61400,61401
2nsfA	261	50.88		
2audA	257	53.99		
1bdfA	235	54.01	d.74.3.1,d.181.1.1	39727,42602
1xu1A	138	54.57	b.22.1.1	116033
1u34A	119	55.19	g.76.1.1	107634
1iseA	185	56.86	d.67.3.1	90691
2o9uX	97	57.80	d.17.1.1	138960
1pv5A	264	58.96	d.251.1.1	95150
1f74A	293	59.18	c.1.10.1	29079
1km4A	247	61.98	c.1.2.3	72740
1xkpC	143	63.57	d.198.1.1	122088
2fepA	289	68.34		
1kxgA	152	71.59	b.22.1.1	73145
1z0sA	278	72.87	e.52.1.1	124328
2gvhA	288	73.87	d.38.1.1,d.38.1.1	135776,135777
2oziA	98	75.06		
1g8kB	133	75.68	b.33.1.1	24435
2gpyA	233	75.98		
1molA	94	76.91	d.17.1.1	37988
2h3bA	494	78.62		
1wqgA	185	79.11		
1pa7A	130	84.21	a.40.1.1	94410
1f3zA	161	86.75	b.84.3.1	28273
1ofzA	312	87.07	b.68.8.1	86978
2jozA	135	87.43		
1f8yA	157	88.57	c.23.14.1	31395
2hi1A	330	89.13		
2cx4A	164	89.14	c.47.1.10	130973
1jyhA	157	89.42	d.60.1.3	71956