# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pwwA	127	13.18		
2vbuA	136	14.53		
1doiA	128	18.69	d.15.4.1	37676
1ygsA	234	21.52	b.26.1.1	23907
1atgA	231	21.94	c.94.1.1	35834
1hyeA	313	30.97	c.2.1.5,d.162.1.1	61400,61401
1hz6A	72	30.98	d.15.7.1	61429
2aefA	234	32.61		
1b77A	228	38.32	d.131.1.2,d.131.1.2	41362,41363
1g8kB	133	38.92	b.33.1.1	24435
1t6aA	126	39.04	d.129.8.1	106555
2r5xA	129	39.49		
1u34A	119	39.85	g.76.1.1	107634
2gigA	257	40.43		
1zkoA	136	42.01		
2nsfA	261	42.55		
1sg1X	161	44.54	g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1	105515,105516,105517,105518
2audA	257	45.18		
1vctA	205	45.56	a.7.12.1,d.286.1.1	119986,119987
1z0sA	278	50.62	e.52.1.1	124328
1pa7A	130	56.85	a.40.1.1	94410
1pv5A	264	57.00	d.251.1.1	95150
1xu1A	138	57.50	b.22.1.1	116033
1hpcA	131	59.99	b.84.1.1	28221
2hi1A	330	62.81		
1bdfA	235	63.05	d.74.3.1,d.181.1.1	39727,42602
1iseA	185	63.39	d.67.3.1	90691
1grjA	158	64.98	a.2.1.1,d.26.1.2	15691,38433
1jyhA	157	65.45	d.60.1.3	71956
2o9uX	97	65.89	d.17.1.1	138960
1f8yA	157	67.51	c.23.14.1	31395
2fepA	289	74.44		
1dk0A	188	78.54	d.35.1.1	38530
1q02A	52	79.39	a.5.2.1	95490
1molA	94	80.85	d.17.1.1	37988
1x0cA	549	81.88		
2p8iA	117	82.30	d.58.55.1	139522
1hxvA	113	82.40	d.26.1.1	71089
2azeA	155	83.81	e.63.1.1	127605
2qkhA	135	85.02		
1x65A	89	88.13