# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pwwA	127	12.18		
1doiA	128	12.26	d.15.4.1	37676
2vbuA	136	17.92		
2nsfA	261	28.84		
1atgA	231	30.15	c.94.1.1	35834
2aefA	234	30.97		
1ygsA	234	33.13	b.26.1.1	23907
1vctA	205	40.75	a.7.12.1,d.286.1.1	119986,119987
2audA	257	41.14		
2gigA	257	41.20		
1zkoA	136	41.53		
2r5xA	129	42.57		
1pa7A	130	42.78	a.40.1.1	94410
1u34A	119	42.80	g.76.1.1	107634
1hyeA	313	44.70	c.2.1.5,d.162.1.1	61400,61401
1g8kB	133	47.85	b.33.1.1	24435
1sg1X	161	50.95	g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1	105515,105516,105517,105518
1kxgA	152	51.41	b.22.1.1	73145
1grjA	158	52.05	a.2.1.1,d.26.1.2	15691,38433
1xu1A	138	54.04	b.22.1.1	116033
1hz6A	72	54.64	d.15.7.1	61429
2hi1A	330	56.82		
1bdfA	235	58.82	d.74.3.1,d.181.1.1	39727,42602
1jyhA	157	62.04	d.60.1.3	71956
1f8yA	157	62.49	c.23.14.1	31395
2fepA	289	63.88		
1a70A	97	64.16	d.15.4.1	37678
1hpcA	131	65.09	b.84.1.1	28221
1t6aA	126	65.33	d.129.8.1	106555
1pv5A	264	67.63	d.251.1.1	95150
1dk0A	188	68.58	d.35.1.1	38530
1f3zA	161	76.26	b.84.3.1	28273
2h3bA	494	76.26		
1iseA	185	80.94	d.67.3.1	90691
1xkpC	143	83.71	d.198.1.1	122088
2o9uX	97	84.85	d.17.1.1	138960
1jx7A	117	86.97	c.114.1.1	77195
1km4A	247	87.27	c.1.2.3	72740
1t5iA	172	87.40	c.37.1.19	106450
1z0sA	278	88.27	e.52.1.1	124328
1hruA	188	88.49	d.115.1.1	40926
1x65A	89	88.56