# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vdaA	828	4.963		
1molA	94	9.026	d.17.1.1	37988
1wqgA	185	12.92		
2o9uX	97	14.64	d.17.1.1	138960
1q3iA	214	15.12	d.220.1.1	104524
1bdfA	235	16.80	d.74.3.1,d.181.1.1	39727,42602
1u34A	119	18.18	g.76.1.1	107634
2pwwA	127	29.67		
1kmiZ	214	38.53	h.4.11.1	72752
2pnvA	43	39.64		
1iseA	185	40.72	d.67.3.1	90691
2aefA	234	43.98		
1ux6A	350	53.19	b.29.1.16,g.75.1.1	100145,100146
1a4iA	301	55.08	c.2.1.7,c.58.1.2	30278,33926
1xkpC	143	57.78	d.198.1.1	122088
1vctA	205	58.38	a.7.12.1,d.286.1.1	119986,119987
2r5xA	129	60.70		
1hxvA	113	65.60	d.26.1.1	71089
2ns6A	185	68.64		
1hyeA	313	75.75	c.2.1.5,d.162.1.1	61400,61401
2azeA	155	79.88	e.63.1.1	127605
1j8bA	112	83.46	d.222.1.1	77101
1g8iA	190	84.73	a.39.1.5	60363
1gd0A	122	84.80	d.80.1.3	39834
1hfoA	113	85.50	d.80.1.3	61006
1t5rA	284	89.27	f.6.1.1	106465