# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pwwA	127	5.492		
2vbuA	136	7.172		
2r5xA	129	19.55		
1wqgA	185	28.00		
1ofzA	312	35.58	b.68.8.1	86978
1f3zA	161	35.94	b.84.3.1	28273
1hyeA	313	36.29	c.2.1.5,d.162.1.1	61400,61401
1iseA	185	37.73	d.67.3.1	90691
1f8yA	157	39.04	c.23.14.1	31395
1u34A	119	40.50	g.76.1.1	107634
1doiA	128	41.25	d.15.4.1	37676
1b77A	228	44.28	d.131.1.2,d.131.1.2	41362,41363
2audA	257	47.80		
1t6aA	126	50.93	d.129.8.1	106555
1atgA	231	51.69	c.94.1.1	35834
1bdfA	235	55.72	d.74.3.1,d.181.1.1	39727,42602
2gigA	257	56.81		
1xj4A	119	57.53	d.110.3.2	122027
2p4bA	295	60.01		
2aefA	234	62.66		
2pqgA	265	63.77		
1xkpC	143	64.12	d.198.1.1	122088
2cx4A	164	65.81	c.47.1.10	130973
1vctA	205	69.28	a.7.12.1,d.286.1.1	119986,119987
1mrjA	247	70.41	d.165.1.1	42177
1ojrA	274	70.55	c.74.1.1	93147
2rdyA	803	71.49		
1vqoA	240	73.91	b.34.5.3,b.40.4.5	120361,120362
1gpr	162	80.17		
1gprA	162	80.47	b.84.3.1	28267
1xu1A	138	80.83	b.22.1.1	116033
1zkoA	136	81.04		
2o9uX	97	81.95	d.17.1.1	138960
1ygsA	234	83.04	b.26.1.1	23907
2nsfA	261	84.85		
1molA	94	85.38	d.17.1.1	37988
1sr4B	261	87.00	d.151.1.1	105949
1y6hA	177	89.26	d.167.1.1	116505