# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u0tA 307 2.298 e.52.1.1 107567 2rdyA 803 3.779 2z8gA 549 3.812 1suwA 249 4.445 e.52.1.1 106027 1x0cA 549 5.382 2e9qA 459 5.435 1a6cA 513 6.955 b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 2ahdA 165 8.088 d.159.1.7 126752 1z0sA 278 9.531 e.52.1.1 124328 2gvhA 288 12.57 d.38.1.1,d.38.1.1 135776,135777 2ds0A 130 12.58 2vbuA 136 13.10 1ajoA 214 13.33 b.29.1.2 24179 1ojrA 274 15.04 c.74.1.1 93147 1vqoA 240 15.88 b.34.5.3,b.40.4.5 120361,120362 1m15A 357 16.67 a.83.1.1,d.128.1.2 78368,78369 2cx4A 164 17.82 c.47.1.10 130973 2qmoA 220 20.15 1yx2A 365 20.70 1czfA 362 20.79 b.80.1.3 28031 2p0kA 212 23.21 1doiA 128 23.46 d.15.4.1 37676 1vctA 205 24.14 a.7.12.1,d.286.1.1 119986,119987 1o6zA 303 24.41 c.2.1.5,d.162.1.1 81107,81108 2f2hA 773 27.82 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1qqqA 264 30.04 d.117.1.1 40931 1p1jA 533 30.50 c.2.1.3,d.81.1.3 87687,87688 1vluA 468 30.66 c.82.1.1 108864 2pwwA 127 30.68 3bcwA 123 31.17 1f3zA 161 31.99 b.84.3.1 28273 1lkfA 299 32.87 f.6.1.1 43821 2qu7A 288 34.08 1nrwA 288 34.11 c.108.1.10 86128 2pcqA 283 34.41 2bjfA 329 35.18 2aaoA 166 36.22 2ae5B 528 37.50 1g8kB 133 38.26 b.33.1.1 24435 1t94A 459 38.33 d.240.1.1,e.8.1.7 106701,106702 1ev5A 264 38.47 d.117.1.1 40935 2g8oA 264 39.70 d.117.1.1 134779 1nd6A 354 44.75 c.60.1.2 80407 1vprA 374 44.84 b.60.1.7 120066 1kyqA 274 46.27 c.2.1.11,e.37.1.1 73281,73282 2i2cA 272 47.60 2op6A 152 48.54 3pcgM 238 49.59 b.3.6.1 22742 1a70A 97 50.02 d.15.4.1 37678 2g30A 258 50.37 b.1.10.1,d.105.1.1 134546,134547 1n7vA 555 50.70 b.126.1.1 85377 1zkoA 136 50.82 1xu1A 138 52.25 b.22.1.1 116033 1ivnA 190 52.66 c.23.10.5 83719 1nnsA 326 53.96 c.88.1.1 85910 2pqgA 265 55.05 2odlA 373 55.15 1r17A 343 57.02 b.2.3.4,b.2.3.4 96796,96797 2audA 257 57.20 1g8lA 411 58.28 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1nynA 131 59.00 d.235.1.1 86410 2e56A 144 59.13 1h2kA 349 59.59 b.82.2.6 76572 2hl0A 143 62.72 2v03A 303 62.87 1x54A 434 65.27 2govA 195 65.53 d.60.1.4 135447 1n0uA 842 65.53 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1hpcA 131 65.66 b.84.1.1 28221 1u34A 119 67.11 g.76.1.1 107634 1tvgA 153 67.20 b.18.1.9 112683 1ygsA 234 68.30 b.26.1.1 23907 1c93A 265 69.26 c.1.8.5 28998 1p9bA 442 70.06 c.37.1.10 94385 2hesX 330 70.58 1gbg 214 71.16 2aefA 234 71.47 1f8yA 157 71.48 c.23.14.1 31395 2gu9A 113 71.95 1t0bA 252 72.38 c.23.16.6 106199 2gl6A 392 72.61 1yzfA 195 72.72 c.23.10.5 124275 2rghA 571 72.76 3clwA 507 73.66 1sr8A 298 73.74 e.54.1.1 105959 1t6aA 126 73.92 d.129.8.1 106555 2r6iA 284 74.14 1q3iA 214 74.28 d.220.1.1 104524 1xl7A 612 74.52 c.43.1.3,c.43.1.3 115438,115439 2vptA 215 75.53 2awkA 228 75.69 1ofzA 312 75.85 b.68.8.1 86978 2hkdA 320 77.62 1shwB 181 78.36 b.18.1.4 105563 2q3bA 313 78.81 2hsiA 282 79.02 1or0B 528 79.61 2ervA 150 79.63 1nnfA 309 79.77 c.94.1.1 85903 2r5xA 129 82.92 1vr5A 547 84.57 c.94.1.1 120437 1a0rB 340 84.85 b.69.4.1 27658 2qmqA 286 85.53 1hxvA 113 86.73 d.26.1.1 71089 2hsjA 214 87.97 1qopB 396 88.58 c.79.1.1 35270