# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vbuA	136	11.73		
1doiA	128	13.97	d.15.4.1	37676
2pwwA	127	17.41		
2rdyA	803	20.82		
2cx4A	164	27.09	c.47.1.10	130973
1z0sA	278	29.82	e.52.1.1	124328
1atgA	231	37.14	c.94.1.1	35834
1zkoA	136	37.53		
1ygsA	234	39.94	b.26.1.1	23907
1u34A	119	41.32	g.76.1.1	107634
2audA	257	41.65		
1hpcA	131	42.72	b.84.1.1	28221
1f8yA	157	44.02	c.23.14.1	31395
1a70A	97	45.46	d.15.4.1	37678
2gigA	257	47.27		
2qu7A	288	47.58		
1sg1X	161	51.15	g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1	105515,105516,105517,105518
1hruA	188	52.88	d.115.1.1	40926
2aefA	234	56.73		
1t5iA	172	58.92	c.37.1.19	106450
2pqgA	265	59.98		
1wqgA	185	61.39		
1vctA	205	61.82	a.7.12.1,d.286.1.1	119986,119987
2nsfA	261	62.38		
2r5xA	129	64.63		
1t6aA	126	66.01	d.129.8.1	106555
1iseA	185	66.23	d.67.3.1	90691
1g8kB	133	67.41	b.33.1.1	24435
1hyeA	313	67.46	c.2.1.5,d.162.1.1	61400,61401
1jyhA	157	67.51	d.60.1.3	71956
1f3zA	161	68.87	b.84.3.1	28273
1bdfA	235	70.17	d.74.3.1,d.181.1.1	39727,42602
1b77A	228	71.12	d.131.1.2,d.131.1.2	41362,41363
1kyqA	274	73.04	c.2.1.11,e.37.1.1	73281,73282
1xu1A	138	74.02	b.22.1.1	116033
1pv5A	264	77.00	d.251.1.1	95150
1jqlB	140	78.57	c.37.1.20	63234
1x65A	89	80.60		
1q6zA	528	85.46	c.31.1.3,c.36.1.5,c.36.1.9	111655,111656,111657
2gvhA	288	87.26	d.38.1.1,d.38.1.1	135776,135777
2jozA	135	87.62