# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pwwA	127	15.72		
1doiA	128	19.31	d.15.4.1	37676
2vbuA	136	20.35		
1zkoA	136	25.29		
1sg1X	161	26.74	g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1	105515,105516,105517,105518
1ygsA	234	28.86	b.26.1.1	23907
2aefA	234	30.41		
2cx4A	164	31.59	c.47.1.10	130973
1vctA	205	32.62	a.7.12.1,d.286.1.1	119986,119987
1t6aA	126	34.19	d.129.8.1	106555
1b77A	228	36.36	d.131.1.2,d.131.1.2	41362,41363
1hpcA	131	37.08	b.84.1.1	28221
2audA	257	37.27		
2nsfA	261	38.05		
1g8kB	133	38.94	b.33.1.1	24435
1xu1A	138	41.85	b.22.1.1	116033
1u34A	119	43.17	g.76.1.1	107634
1atgA	231	44.99	c.94.1.1	35834
2rdyA	803	45.22		
1grjA	158	45.38	a.2.1.1,d.26.1.2	15691,38433
2gigA	257	48.36		
1kxgA	152	49.59	b.22.1.1	73145
2r5xA	129	52.49		
3cu5A	141	58.51		
1hyeA	313	61.29	c.2.1.5,d.162.1.1	61400,61401
1hruA	188	61.88	d.115.1.1	40926
1z0sA	278	64.59	e.52.1.1	124328
2fepA	289	65.27		
2eabA	899	65.55		
1hz6A	72	66.49	d.15.7.1	61429
1iseA	185	67.54	d.67.3.1	90691
1wqgA	185	70.48		
3cihA	739	71.48		
2jozA	135	74.12		
1p9bA	442	76.07	c.37.1.10	94385
1hl9A	449	76.17	b.71.1.3,c.1.8.11	90650,90651
2b4lA	268	77.18		
2df8A	325	81.42		
1jyhA	157	84.00	d.60.1.3	71956
1pa7A	130	88.51	a.40.1.1	94410
2ns6A	185	89.42