# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pwwA	127	17.90		
1wqgA	185	21.06		
1doiA	128	23.38	d.15.4.1	37676
2audA	257	24.16		
1ygsA	234	24.25	b.26.1.1	23907
2fepA	289	25.20		
2gigA	257	29.21		
2cx4A	164	31.39	c.47.1.10	130973
1t6aA	126	40.04	d.129.8.1	106555
1zkoA	136	41.32		
2oziA	98	43.13		
2aefA	234	45.08		
1b77A	228	46.81	d.131.1.2,d.131.1.2	41362,41363
1atgA	231	47.55	c.94.1.1	35834
2vbuA	136	48.37		
1iseA	185	48.53	d.67.3.1	90691
1vctA	205	53.43	a.7.12.1,d.286.1.1	119986,119987
1hruA	188	63.96	d.115.1.1	40926
2nsfA	261	68.90		
1bdfA	235	68.96	d.74.3.1,d.181.1.1	39727,42602
1q02A	52	72.10	a.5.2.1	95490
1hpcA	131	72.17	b.84.1.1	28221
1u34A	119	72.33	g.76.1.1	107634
1pa7A	130	72.93	a.40.1.1	94410
2ns6A	185	73.93		
1ybhA	590	77.82	c.31.1.3,c.36.1.5,c.36.1.9	122891,122892,122893
1dk0A	188	84.77	d.35.1.1	38530
2r5xA	129	85.52		
1grjA	158	88.35	a.2.1.1,d.26.1.2	15691,38433