# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pwwA	127	11.02		
2aefA	234	12.53		
1vctA	205	19.78	a.7.12.1,d.286.1.1	119986,119987
2cx4A	164	24.87	c.47.1.10	130973
2audA	257	28.04		
1doiA	128	29.01	d.15.4.1	37676
1ygsA	234	33.42	b.26.1.1	23907
1iseA	185	33.81	d.67.3.1	90691
1zkoA	136	34.81		
1g8kB	133	36.39	b.33.1.1	24435
1atgA	231	37.46	c.94.1.1	35834
2vbuA	136	40.08		
1u34A	119	40.23	g.76.1.1	107634
2r5xA	129	40.59		
1z0sA	278	40.76	e.52.1.1	124328
2gigA	257	44.18		
2rdyA	803	46.50		
1q02A	52	46.59	a.5.2.1	95490
1b77A	228	46.72	d.131.1.2,d.131.1.2	41362,41363
1grjA	158	54.98	a.2.1.1,d.26.1.2	15691,38433
1t6aA	126	55.62	d.129.8.1	106555
1hxvA	113	57.69	d.26.1.1	71089
1hz6A	72	58.68	d.15.7.1	61429
1hpcA	131	59.80	b.84.1.1	28221
2oziA	98	61.52		
1x65A	89	65.52		
1sg1X	161	68.12	g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1	105515,105516,105517,105518
2fepA	289	69.91		
1pv5A	264	69.91	d.251.1.1	95150
1wqgA	185	72.08		
2qu7A	288	72.96		
1kxgA	152	77.32	b.22.1.1	73145
1we3O	100	77.37	b.35.1.1	109330
1hyeA	313	80.27	c.2.1.5,d.162.1.1	61400,61401
1jyhA	157	84.01	d.60.1.3	71956
1fi2A	201	85.39	b.82.1.2	59845
2ns6A	185	86.22		
1mrjA	247	87.27	d.165.1.1	42177