# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1molA	94	5.125	d.17.1.1	37988
1wqgA	185	6.170		
2o9uX	97	8.694	d.17.1.1	138960
1iseA	185	10.10	d.67.3.1	90691
1u34A	119	10.48	g.76.1.1	107634
1hyeA	313	11.60	c.2.1.5,d.162.1.1	61400,61401
2pwwA	127	11.86		
1ex2A	189	18.71	c.51.4.2	33225
1x65A	89	22.60		
3csvA	333	26.75		
1is1A	185	28.48	d.67.3.1	83704
1qcsA	211	29.00	b.52.2.3,d.31.1.1	26927,38461
1x54A	434	31.63		
1dceB	331	33.80	a.102.4.3	18872
2rh2A	62	34.10		
2gqvA	62	35.08	b.34.4.1	135515
1a4iA	301	35.11	c.2.1.7,c.58.1.2	30278,33926
2vdaA	828	36.75		
2amlA	373	36.84		
2vbuA	136	37.19		
1yueA	427	38.08		
2qkhA	135	38.46		
1vie	62	39.42		
1yvwA	115	41.39	a.204.1.4	124122
2aefA	234	44.98		
1hz6A	72	50.34	d.15.7.1	61429
1vqoR	155	51.00	d.55.1.1	120379
2jn9A	105	52.21		
1hxvA	113	54.04	d.26.1.1	71089
1vh0A	161	55.25	c.116.1.3	100626
1k6zA	141	59.38	d.198.1.1	68247
1b77A	228	59.97	d.131.1.2,d.131.1.2	41362,41363
1sg1X	161	61.05	g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1	105515,105516,105517,105518
2hi1A	330	61.56		
2e56A	144	63.58		
2r5xA	129	65.59		
2gvhA	288	70.43	d.38.1.1,d.38.1.1	135776,135777
1jjfA	268	71.27	c.69.1.2	66765
1zpvA	91	76.20	d.58.18.7	125475
1mkmA	249	77.72	a.4.5.33,d.110.2.2	79242,79243
1l6pA	125	78.35	b.1.17.1	73626
1br9	194	79.08		
1zupA	315	81.89	c.55.3.11	125681
2c3bA	172	85.55	b.62.1.1	129723
2j3wB	188	87.75