# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2crvA 120 2.748 2qzbA 166 4.138 1l0wA 580 5.051 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1qcsA 211 5.074 b.52.2.3,d.31.1.1 26927,38461 2vl6A 268 8.043 1bdfA 235 8.197 d.74.3.1,d.181.1.1 39727,42602 2hzqA 174 8.795 2bqxA 173 10.42 2ppnA 107 12.96 2e2dC 180 13.55 b.40.3.1 131980 2awgA 118 14.19 1o7iA 119 14.26 b.40.4.3 86642 2biwA 490 15.45 1earA 147 16.42 b.107.1.1,d.58.38.1 64875,64876 1oo2A 119 17.02 b.3.4.1 93372 1j2gA 319 17.69 d.96.1.4,d.96.1.4 103824,103825 1n9pA 207 17.94 b.1.18.16 80343 2vbuA 136 18.12 2fwvA 226 19.23 1gmuA 143 19.27 b.107.1.1,d.58.38.1 65335,65336 1xaoA 121 19.65 2hqvA 195 20.59 e.62.1.2 136674 1x54A 434 22.61 2bklA 695 23.16 2f4eA 180 24.96 1ouwA 152 25.40 b.77.3.1 93571 2hd3A 103 28.16 2ogrA 229 29.13 1ltlA 279 31.14 b.40.4.11 84701 1b8aA 438 32.18 b.40.4.1,d.104.1.1 25244,40765 3bm4A 210 32.46 1twlA 186 32.54 b.40.5.1 112764 1bkfA 107 32.73 d.26.1.1 38382 1i4uA 181 33.11 b.60.1.1 61732 1bkf 107 33.84 1pm3A 78 35.00 b.41.1.2 94889 2fxqA 264 35.42 1xttA 216 36.00 c.61.1.1 122300 2qqrA 118 37.41 2oynA 146 37.67 1u79A 129 38.55 d.26.1.1 107714 2qw7A 111 38.55 1je5A 206 39.43 b.40.4.7 62909 2q2gA 180 39.46 2cu9A 161 42.89 2prdA 174 44.16 b.40.5.1 25435 1wf7A 103 46.50 b.36.1.1 114577 1xl4A 301 47.33 b.1.18.16,f.14.1.1 115430,115431 2z14A 133 48.09 1s9jA 341 52.15 d.144.1.7 112049 2odtX 328 52.47 2jn9A 105 52.87 3brnA 157 52.88 1e1oA 504 53.01 b.40.4.1,d.104.1.1 25258,40714 1r4uA 301 54.25 d.96.1.4,d.96.1.4 97047,97048 2oauA 306 54.25 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 2bgiA 272 54.39 1wj9A 211 54.94 d.58.53.1,d.58.53.1 114694,114695 1x65A 89 54.94 2acoA 173 55.17 2d93A 134 55.37 1j6qA 136 55.54 b.40.9.1 77091 1i40A 175 55.69 b.40.5.1 66024 1quqB 121 57.60 b.40.4.3 25305 2bh8A 101 58.42 1qexA 288 58.72 b.32.1.1 24425 1o6gA 710 58.89 b.69.7.1,c.69.1.4 81087,81088 1bj7 156 59.89 3cblA 377 60.00 3c5pA 197 60.68 1vjfA 180 62.01 d.116.1.1 100809 2dscA 212 63.73 2hhpA 530 63.85 a.160.1.1,d.218.1.3,d.58.16.1 136503,136504,136505 2pi2E 142 64.66 1iz6A 138 65.71 b.34.5.2,b.40.4.5 76976,76977 2j8gA 339 67.02 1gvpA 87 67.15 b.40.4.7 25369 1ogaD 215 70.11 b.1.1.1,b.1.1.2 86990,86991 2e0jA 129 71.30 3bpuA 88 72.84 2yvpA 182 72.92 1ktgA 138 74.16 d.113.1.1 72972 1uwfA 158 74.34 b.2.3.2 119758 1sekA 378 74.62 e.1.1.1 42675 2ibaA 302 75.30 d.96.1.4,d.96.1.4 137178,137179 1zpsA 138 76.14 b.168.1.1 125473 2gj3A 120 76.70 2d2eA 250 78.25 1j7gA 144 79.58 c.110.1.1 84130 1ze3C 205 80.05 b.1.11.1,b.7.2.1 124974,124975 2ox7A 155 80.33 2bibA 547 81.07 b.109.1.1,d.157.1.8 128581,128582 2gbwA 454 81.97 1qftA 175 82.45 b.60.1.1 27151 2au7A 175 83.53 2ofzA 138 84.71 1omhA 293 85.16 d.89.1.5 93348 2d7vA 162 85.76 1se8A 301 86.42 b.40.4.3 105448 1t4hA 290 86.51 d.144.1.7 106420 1wrrA 301 86.83 d.96.1.4,d.96.1.4 121204,121205 2iciA 227 87.56 2vfrA 422 87.78 2o9uX 97 88.81 d.17.1.1 138960