# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vbuA	136	6.728		
2p8tA	200	8.746		
2a6hA	315	12.06	d.74.3.1,d.181.1.1	126260,126261
2hsiA	282	14.90		
2a8aA	439	15.14		
2nsfA	261	15.39		
2qkhA	135	22.82		
1y6hA	177	24.53	d.167.1.1	116505
1x0cA	549	27.75		
1nm1G	125	27.99	d.109.1.1	80653
1ygsA	234	31.58	b.26.1.1	23907
1v9wA	130	32.75	c.47.1.16	108453
1xfuA	747	33.05		
2o6pA	161	33.92		
2a97A	439	35.89		
2ns6A	185	38.26		
2ok8A	316	39.63		
2aefA	234	39.98		
1bfd	528	40.19		
1ogoX	574	40.40	b.133.1.1,b.80.1.10	92925,92926
2pwwA	127	40.50		
2a5sA	284	41.57	c.94.1.1	126178
1x65A	89	41.72		
2eqaA	352	41.78		
1xfxA	777	51.79		
2r5xA	129	52.29		
2nlwA	105	55.69		
1doiA	128	56.31	d.15.4.1	37676
1m2tA	254	56.90	d.165.1.1	84761
1t6aA	126	57.70	d.129.8.1	106555
1e1hA	287	58.43	d.92.1.7	83167
1gudA	288	59.73	c.93.1.1	83326
1yjmA	110	60.79	b.26.1.2	123427
1xhvA	257	60.82	c.52.1.19	109597
2audA	257	61.03		
2jozA	135	63.37		
1pieA	419	66.15	d.14.1.5,d.58.26.7	94706,94707
1gpr	162	66.69		
2gigA	257	70.77		
2oynA	146	70.94		
1fdrA	248	71.84	b.43.4.2,c.25.1.1	25653,31543
1d4xG	126	72.55	d.109.1.1	59109
1pm3A	78	73.50	b.41.1.2	94889
1q6zA	528	75.37	c.31.1.3,c.36.1.5,c.36.1.9	111655,111656,111657
1es6A	296	86.46	b.31.1.1,b.31.1.1	83048,83049
1f3zA	161	86.93	b.84.3.1	28273
2avtA	378	89.76		
1b0aA	288	89.88	c.2.1.7,c.58.1.2	30286,33934