# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vbuA	136	4.603		
2hsiA	282	10.03		
1xfxA	777	10.34		
1xfuA	747	10.74		
1x0cA	549	12.35		
1i7pA	274	12.73	b.43.4.2,c.25.1.1	66048,66049
1pm3A	78	16.34	b.41.1.2	94889
1t6aA	126	19.12	d.129.8.1	106555
2nsfA	261	19.68		
2a5sA	284	20.41	c.94.1.1	126178
2a6hA	315	22.29	d.74.3.1,d.181.1.1	126260,126261
1jx7A	117	25.27	c.114.1.1	77195
1nm1G	125	25.89	d.109.1.1	80653
2pwwA	127	26.20		
1ygsA	234	26.51	b.26.1.1	23907
2ok8A	316	26.53		
1yjmA	110	26.83	b.26.1.2	123427
1krhA	338	27.26	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2p8tA	200	27.84		
1doiA	128	28.56	d.15.4.1	37676
2o6pA	161	30.55		
1v9wA	130	30.87	c.47.1.16	108453
1y6hA	177	34.55	d.167.1.1	116505
1ogoX	574	34.82	b.133.1.1,b.80.1.10	92925,92926
1fdrA	248	36.19	b.43.4.2,c.25.1.1	25653,31543
1gpr	162	40.65		
1x65A	89	42.20		
2aefA	234	42.85		
2jozA	135	44.66		
2qkhA	135	45.04		
2r5xA	129	48.80		
2ns6A	185	49.00		
2a8aA	439	50.45		
1y3tA	337	50.54	b.82.1.5	122600
2oynA	146	53.87		
1f3zA	161	55.66	b.84.3.1	28273
1bdfA	235	58.15	d.74.3.1,d.181.1.1	39727,42602
1d4xG	126	58.74	d.109.1.1	59109
1lm4A	194	65.81	d.167.1.1	84626
2jodA	106	66.31		
1qx4A	274	67.03	b.43.4.2,c.25.1.1	104624,104625
2oa2A	148	68.31		
1vziA	126	68.33	b.1.13.1,g.41.5.2	108967,108968
2qdxA	257	69.13		
1es6A	296	70.05	b.31.1.1,b.31.1.1	83048,83049
2nlwA	105	70.84		
2audA	257	71.26		
1xhvA	257	75.25	c.52.1.19	109597
2avtA	378	77.99		
1ujxA	119	80.89	b.26.1.2	99473
1a8pA	258	81.34	b.43.4.2,c.25.1.1	25654,31544
2pn0A	141	82.60		
1jeyB	565	82.70	b.131.1.2,c.62.1.4	90372,90373
2gigA	257	85.96		
2rdyA	803	88.37		
1zxq	192	89.05		
2o9uX	97	89.86	d.17.1.1	138960