# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1b77A	228	3.727	d.131.1.2,d.131.1.2	41362,41363
2vbuA	136	5.285		
1pa7A	130	8.698	a.40.1.1	94410
2ns6A	185	9.815		
1yjmA	110	10.73	b.26.1.2	123427
1t6aA	126	10.88	d.129.8.1	106555
2ok8A	316	12.56		
2a6hA	315	12.61	d.74.3.1,d.181.1.1	126260,126261
2pwwA	127	13.61		
1frdA	98	14.44	d.15.4.1	37648
2c5aA	379	14.93	c.2.1.2	129894
2a8aA	439	16.21		
1qxrA	189	17.85	b.82.1.7	96552
2an1A	292	18.09		
1vziA	126	18.76	b.1.13.1,g.41.5.2	108967,108968
2oziA	98	19.31		
1y6hA	177	19.66	d.167.1.1	116505
1jhfA	202	20.24	a.4.5.2,b.87.1.1	63057,63058
1i7pA	274	20.96	b.43.4.2,c.25.1.1	66048,66049
1nm1G	125	22.37	d.109.1.1	80653
1pymA	295	24.26	c.1.12.7	29308
1xhvA	257	24.97	c.52.1.19	109597
1krhA	338	25.25	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1fdrA	248	26.17	b.43.4.2,c.25.1.1	25653,31543
1yt5A	258	26.54		
1umuA	116	27.15	b.87.1.1	28382
2a5sA	284	27.79	c.94.1.1	126178
3clqA	421	31.00		
1y3tA	337	33.04	b.82.1.5	122600
2adcA	229	33.60	d.58.7.1,d.58.7.1	126582,126583
2gsmB	262	33.96	b.6.1.2,f.17.2.1	135590,135591
1ygsA	234	34.43	b.26.1.1	23907
2nsfA	261	34.93		
2aefA	234	34.98		
1qx4A	274	35.28	b.43.4.2,c.25.1.1	104624,104625
1bdfA	235	37.00	d.74.3.1,d.181.1.1	39727,42602
2avtA	378	37.65		
5croA	66	38.02	a.35.1.2	17044
1o58A	303	40.42	c.79.1.1	92491
2audA	257	41.54		
2j8hA	197	41.66		
2r5xA	129	43.82		
2p8tA	200	46.19		
2irpA	208	46.20		
2pfrA	294	46.72		
1molA	94	48.27	d.17.1.1	37988
2qkhA	135	48.73		
1gpr	162	49.52		
1we3O	100	50.91	b.35.1.1	109330
1ci9A	392	51.27	e.3.1.1	64767
1w1wE	121	51.36	a.4.5.57	114084
2a97A	439	52.75		
2dyiA	162	53.13		
2oyzA	94	53.61		
2gigA	257	53.76		
1x65A	89	53.93		
2pn0A	141	54.73		
2hsiA	282	55.72		
2pa8D	265	58.44		
1evlA	401	59.14	c.51.1.1,d.104.1.1	33202,40751
1d4xG	126	59.61	d.109.1.1	59109
2o9uX	97	61.06	d.17.1.1	138960
2f1lA	187	64.08	b.41.1.4,b.43.3.4	132780,132781
1wdvA	152	64.62	d.116.1.1	114539
2biiA	424	65.96		
2fctA	313	65.96	b.82.2.9	133282
1v9wA	130	68.41	c.47.1.16	108453
1pieA	419	69.07	d.14.1.5,d.58.26.7	94706,94707
1olzA	663	74.93	b.1.1.4,b.69.12.1,g.16.2.1	93341,93342,93343
1bioA	228	74.94	b.47.1.2	26314
1u0tA	307	75.10	e.52.1.1	107567
2jodA	106	76.00		
1gudA	288	77.36	c.93.1.1	83326
1p63A	144	79.99	b.42.1.1	94153
2opwA	291	81.03		
1m2tA	254	85.56	d.165.1.1	84761
2jozA	135	85.57		
2qsfA	533	86.17		
2rdyA	803	86.90		
1n12A	138	87.11	b.2.3.2	79779
1x82A	190	89.93	b.82.1.7	114955