# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2vbuA	136	7.698		
1xfuA	747	16.02		
2pwwA	127	16.71		
2a6hA	315	17.17	d.74.3.1,d.181.1.1	126260,126261
2nsfA	261	17.36		
1xfxA	777	19.69		
2p8tA	200	20.18		
1b0aA	288	21.67	c.2.1.7,c.58.1.2	30286,33934
1y6hA	177	22.46	d.167.1.1	116505
1v9wA	130	23.63	c.47.1.16	108453
1x65A	89	25.58		
2a8aA	439	27.06		
1yjmA	110	27.75	b.26.1.2	123427
2nlwA	105	27.81		
2ok8A	316	29.02		
2r5xA	129	30.44		
1t6aA	126	35.64	d.129.8.1	106555
1gudA	288	36.29	c.93.1.1	83326
2aefA	234	39.83		
2o6pA	161	40.24		
2qkhA	135	41.94		
1fdrA	248	45.59	b.43.4.2,c.25.1.1	25653,31543
1es6A	296	49.88	b.31.1.1,b.31.1.1	83048,83049
2hsiA	282	49.97		
1x0cA	549	50.22		
1krhA	338	52.32	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1ygsA	234	53.24	b.26.1.1	23907
1doiA	128	53.82	d.15.4.1	37676
1nm1G	125	54.00	d.109.1.1	80653
1bdfA	235	54.01	d.74.3.1,d.181.1.1	39727,42602
1aipA	405	54.51	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
2o9uX	97	55.03	d.17.1.1	138960
2p8iA	117	55.08	d.58.55.1	139522
2a5sA	284	55.79	c.94.1.1	126178
1bfd	528	56.18		
1gpr	162	57.11		
2jodA	106	57.72		
1ro5A	201	57.93	d.108.1.3	105023
1ogoX	574	58.94	b.133.1.1,b.80.1.10	92925,92926
1pm3A	78	59.94	b.41.1.2	94889
1molA	94	68.57	d.17.1.1	37988
2avtA	378	70.59		
2eqaA	352	71.77		
2oynA	146	71.93		
2a97A	439	74.25		
1pa7A	130	77.07	a.40.1.1	94410
1xhvA	257	78.01	c.52.1.19	109597
2gigA	257	80.76		
1zxq	192	83.04		
2jozA	135	86.93		
1offA	97	87.98	d.15.4.1	86947
2ns6A	185	88.67		
2gsmB	262	89.99	b.6.1.2,f.17.2.1	135590,135591